View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5801_low_1 (Length: 432)
Name: NF5801_low_1
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5801_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 4935982 - 4935579
Alignment:
| Q |
19 |
acccagttggttgcagatttgatgaatccattgtccaccacaaggtaattattcaacttattttctatttagatggagaaaattaagaagcaaattatgg |
118 |
Q |
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| T |
4935982 |
acccagttggttgcagatttgatgaatccattgtccaccacaaggtaattattcaacttattttcaatttagatggagaaaattaagaagcaaattatgg |
4935883 |
T |
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| Q |
119 |
aaattaaacacctaacatatgttacatttccatttctagtattttaaggaaaatccagactataacaactctgcatacaacactagatatgggatttact |
218 |
Q |
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| T |
4935882 |
aaattaaacacctaacatatgttacatttccatttctagtattttaaggaaaatccagactataacaactctgcatacaacactagatatgggatttact |
4935783 |
T |
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| Q |
219 |
ctgagaaatgtggacttaacaatgtcatgatgtcatggggacatgatgactatatgtatctagtaagtcctttctaaatccaagtgannnnnnnnnnnnn |
318 |
Q |
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| T |
4935782 |
ctgagaaatgtggacttaacaatgtcatgatgtcatggggacatgatgactacatgtatctagtaagtcctttctaaatccaagtgattttttctttctt |
4935683 |
T |
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| Q |
319 |
nnnnnnnaatgttgcatattcaatttaatgtgttattatttcatatatagtgaagaaagtttaataaattttgggttgttgttttaaggtggcaaaggag |
418 |
Q |
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| T |
4935682 |
tctttctaatgtagcatattcaatttaatgtgttattatttcatatatagtgaagaaagtttaataaa-tttgggttgttgttttaaggtggcaaaggag |
4935584 |
T |
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| Q |
419 |
aataa |
423 |
Q |
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| T |
4935583 |
aataa |
4935579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 42954479 - 42954527
Alignment:
| Q |
226 |
atgtggacttaacaatgtcatgatgtcatggggacatgatgactatatg |
274 |
Q |
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| T |
42954479 |
atgtggactagacaatgtgatgatgtcatggggacatgatgattatatg |
42954527 |
T |
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