View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5802-Insertion-3 (Length: 321)
Name: NF5802-Insertion-3
Description: NF5802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5802-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 18142389 - 18142273
Alignment:
| Q |
89 |
ggctggttgtagcattagcacttttatttgccaatccttttgtttaatcttataaacaaatagaaaaagaaaaatacatattgttttttccgtggacttt |
188 |
Q |
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| T |
18142389 |
ggctggttgtagcattagcacttttatttgccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattgttttttccgtggacttt |
18142290 |
T |
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| Q |
189 |
cattgctgctattgctt |
205 |
Q |
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| T |
18142289 |
cattgctgctattgctt |
18142273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 18142226 - 18142166
Alignment:
| Q |
261 |
tacaatttattcttcatttggattaacatactgattcgccttcttccgtccctttatttag |
321 |
Q |
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| T |
18142226 |
tacaatttattcttcatttggattaacatatggattcgccttcttccgtccctttatttag |
18142166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 41394348 - 41394234
Alignment:
| Q |
91 |
ctggttgtagcattagcacttttatttgccaatccttttgtttaatcttataaacaaatagaaaaagaaaaatacatattgttttttccgtggactttca |
190 |
Q |
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| T |
41394348 |
ctggttgtagcattagcacttttatttgccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattgttttttccgtggactttca |
41394249 |
T |
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| Q |
191 |
ttgctgctattgctt |
205 |
Q |
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| T |
41394248 |
ttgctgctattgctt |
41394234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 35442988 - 35443067
Alignment:
| Q |
9 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatc |
88 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatc |
35443067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 16059981 - 16060047
Alignment:
| Q |
114 |
atttgccaatccttttgtttaatcttataaacaaatagaaaaagaaaaatacatattgttttttccg |
180 |
Q |
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| T |
16059981 |
atttgccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattgttttttccg |
16060047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 18040685 - 18040587
Alignment:
| Q |
109 |
cttttatttgccaatccttttg----tttaatcttataaacaaatagaaaaagaaaaatacatattgttttttccgtggactttcattgctgctattgct |
204 |
Q |
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| T |
18040685 |
cttttatttgtcaatccttttgcttatttaatctt-taaaaaaatagaaagaaaaagttacatattgttttttt-gtggactttcgttgctgctattgct |
18040588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
14 |
accacttattttacataaatatatgtattt |
43 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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