View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5802-Insertion-4 (Length: 238)
Name: NF5802-Insertion-4
Description: NF5802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5802-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 45182003 - 45182159
Alignment:
| Q |
8 |
aagaagttggtacaagaaaaacttgtgatgatcaggagtaaggccattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaaga |
107 |
Q |
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| T |
45182003 |
aagaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgccttg--------atgtaaatcagagtccatcaactcaaaaacaaga |
45182094 |
T |
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| Q |
108 |
taaatatctttgaactcacgaagaggagaaggaggaagcataatatgcgtaatttgtactatatc |
172 |
Q |
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| T |
45182095 |
taaatatctttgaactcacgacgaggagaaggaggaagcataatatgcgtaatttgtactatatc |
45182159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 45175191 - 45175393
Alignment:
| Q |
9 |
agaagttggtacaagaaaaacttgtgatgatcaggagtaaggccattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagat |
108 |
Q |
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| T |
45175191 |
agaagttgatacaagaaaaattggtggtgctgaggagtaagatcatgatttgccttaattacttgatgtagatcagattccatcaactcaaagacaacat |
45175290 |
T |
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| Q |
109 |
aaatatctttgaactcacgaagaggagaaggaggaagcataatatgcgtaatttgtactatatcaggatgatgttggacttggagcaagcgcaggagctt |
208 |
Q |
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| T |
45175291 |
agatatccctaaactcacggcgtg---aaggaggaagcataatatgcctaatttcaacaatatcaggatgc-------ct--gagcaagcgcaagagctt |
45175378 |
T |
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| Q |
209 |
gatttctcttaggat |
223 |
Q |
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| T |
45175379 |
gatttctcttaggat |
45175393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 48725078 - 48725013
Alignment:
| Q |
56 |
atttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaa |
121 |
Q |
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| T |
48725078 |
atttgctttgatgacttgatgtaaatctgattccataagttcaaaaacaacatatatatctttgaa |
48725013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 7253151 - 7253216
Alignment:
| Q |
56 |
atttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaa |
121 |
Q |
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| T |
7253151 |
atttgctttgatgacctgatgtaaatcagattccatgagttcaaatacaacatatatatctttgaa |
7253216 |
T |
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