View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803-Insertion-3 (Length: 681)
Name: NF5803-Insertion-3
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 118 - 681
Target Start/End: Original strand, 2540875 - 2541438
Alignment:
| Q |
118 |
aaagatgaaaatctaagtcagaagaatacttgagaaaatatggacctaccggggtgcgtatcaagatatgatttgctgagaccttcacagtgatatgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2540875 |
aaagatgaaaatctaagtcagaagaatacttgagaaaatatggacctaccggggtgcgtatcaagatatgatttgctgagaccttcacagtgatatgatt |
2540974 |
T |
|
| Q |
218 |
taaccaccccctgccgtgtttctagatgacgttcttttttcgcttgtttagatactttgagcagaaggtcatcatactcttcttcgtcataaggcctttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2540975 |
taaccaccccctgccgtgtttctagatgacgttcttttttcgcttgtttagatactttgagcagaaggtcatcatactcttcttcgtcataaggcctttc |
2541074 |
T |
|
| Q |
318 |
aagacattccataagtgttctcctaaattgagaatgatcataagcagctatttgcttgttgtcttcggggttcgtttcttctccaaaacactaaaaacag |
417 |
Q |
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| T |
2541075 |
aagacattccataagtgttctcctaaattgagaatgatcataagcagctatttgcttgttgtcttcggggttcgtttcttctccaaaacactaaaaacag |
2541174 |
T |
|
| Q |
418 |
atagcataaagacgtgttatggaagaagttaaaaattaactgtttggaattttttcttttnnnnnnnctgaatagcatgcatgtttaaggatcatttgca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2541175 |
atagcataaagacgtgttatggaagaagttaaaaattaactgtttggaattttttcttttaaaaaaactgaatagcatgcatgtttaaggatcatttgca |
2541274 |
T |
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| Q |
518 |
aaatatgactaatacagagatatactgtgcaaagttgaagacacttactgatgaatcatatgtctttgaagaaacgaaaggggtgtttccacacattgga |
617 |
Q |
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| T |
2541275 |
aaatatgactaatacagagatatactgtgcaaagttgaagacacttactgatgaatcatatgtctttgaagaaacgaaaggggtgtttccacagattgga |
2541374 |
T |
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| Q |
618 |
taagaatccaaaataattagatctgaatcagaggaattattctcatcctccacattggatgtgt |
681 |
Q |
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| T |
2541375 |
aaagaatccaaaataattagatctgaatcagaggaattactatcatcctccacattggatgtgt |
2541438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 681
Target Start/End: Complemental strand, 8776911 - 8776238
Alignment:
| Q |
8 |
acacatcaagtgacagttttgcaatggtagcggtgatgattgaatatatagcaatgaatcttgattgcatccttaggatcaaactttaagctataccatt |
107 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776911 |
acacatcaagtgagagttttgcaatggtagtggtgatgattgaatatagagcaatgaatcttgattgcatccttaggatcaaactttaagctataccatt |
8776812 |
T |
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| Q |
108 |
tttataaataaaagatgaaaatctaagt---cagaagaatacttgagaaaatatggacctaccggggtgcgtatcaagatatgatttgctgagaccttca |
204 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||| |||| | ||||||||||||||||||| ||||||| | |
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| T |
8776811 |
tttataaataaaagaagaaaatctaagaagccagaagaatacttgaaaagatatggacctaccagggtacatatcaagatatgatttgctaagaccttta |
8776712 |
T |
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| Q |
205 |
cagtgatatgatttaaccaccccctgccgtgtttctagatgacgttcttttttcgcttgtttagatactttgagcagaaggtcatcatactcttcttcgt |
304 |
Q |
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||| ||||| ||| ||||||||| |||| ||||||||||| ||||||||||| | || |||||| ||||||| ||||| ||||||||||||| || || |
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| T |
8776711 |
gagtaatatgctttgaccaccccccgccgggtttctagatggcgttctttttttgtatgcttagatgctttgagaagaagctcatcatactctttttggt |
8776612 |
T |
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| Q |
305 |
cataaggcctttcaagacattccataagtgttctcctaaattgagaatgatcataagcagctatttgcttgttgtcttcggggttcgtttcttctccaaa |
404 |
Q |
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|||||||||| |||||||||||||||||| || ||| |||| |||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||| |
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| T |
8776611 |
cataaggcctgtcaagacattccataagtcttttccggaattcagaaagatcataagcagctatttggttgttgtcttcggggttcattttatctccaaa |
8776512 |
T |
|
| Q |
405 |
acactaaaaacagatagcataaagacgtgttatggaagaagttaaaaattaactgtttggaattttttcttttnnnnnnnctgaatagcatgcatgttta |
504 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||| |||||||||| | |||||| || |||| ||| | ||| ||| ||||||||| |
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| T |
8776511 |
acactaaaaacacatagcataaagacgtgttatgggagaaaataaaaattaattttttggatttgtttc-tttaaaaaaacggaacagcgtgcatgtttg |
8776413 |
T |
|
| Q |
505 |
aggatcatttgcaaaatatgactaatacagagatatactgtgcaaagttgaagacacttactgatgaatcatatgtctttgaagaaacgaaaggggtgtt |
604 |
Q |
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||| | |||||||||||| | ||||| ||||| | |||||| |||||||||| | |||| |||| ||||||||| ||||||||||||||||||||||| |
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| T |
8776412 |
tggaccgtttgcaaaatatcattaatatagagacacactgtg--aagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaaaggggtgtt |
8776315 |
T |
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| Q |
605 |
tccacacattggataagaatccaaaataattagatctgaatcagaggaattattctcatcctccacattggatgtgt |
681 |
Q |
| |
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| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776314 |
ttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgt |
8776238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 303 - 468
Target Start/End: Complemental strand, 8782605 - 8782441
Alignment:
| Q |
303 |
gtcataaggcctttcaagacattccataagtgttctcctaaattgagaatgatcataagcagctatttgcttgttgtcttcggggttcgtttcttctcca |
402 |
Q |
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|||||||||||| |||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
8782605 |
gtcataaggcctgtcaagatgttccaaaagtcttctcctaaattgagaatcatcataagcagctatttgcatgttgtctttggggttcacttcttctcca |
8782506 |
T |
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| Q |
403 |
aaacactaaaaacagatagcataaagacgtgttatg-gaagaagttaaaaattaactgtttggaatt |
468 |
Q |
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| T |
8782505 |
aaacactaaacacacaaagcat--agacgtgttatgaaaaaaagttaaaaattaacagtttgaaatt |
8782441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 207 - 476
Target Start/End: Complemental strand, 8788460 - 8788196
Alignment:
| Q |
207 |
gtgatatgatttaaccaccccctgccgtgtttctagatgacgttcttttttcgcttgtttagatactttgagcagaaggtcatcatactcttcttcgtca |
306 |
Q |
| |
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||||||||||| |||||||| | |||||||||| | ||| ||||| | |||| || | | ||| || |||||||||| |||||||||| || || | |
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| T |
8788460 |
gtgatatgattcaaccaccctccgccgtgtttcgaaatggcgttcctgtttctttttctcacatagttcgagcagaagggactcatactcttgttggtta |
8788361 |
T |
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| Q |
307 |
taaggcctttcaagacattccataagtgttctcctaaattgagaatgatcataagcagctatttgcttgttgtcttcggggttcgtttcttctccaaaac |
406 |
Q |
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||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||| | ||||| ||| ||| ||||| ||||| |
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| T |
8788360 |
taaggcctttcaagatgttccaaaagtcttctcctaaattgagaatcatcataagcagctatttgcacttcgtctttgggattcaattctt---caaaat |
8788264 |
T |
|
| Q |
407 |
actaaaaacagatagcataaagacgtgttatggaagaagttaaaaattaactgtttggaattttttcttt |
476 |
Q |
| |
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|||||| ||| | ||||| ||| |||| ||| || | ||||||||||||||||||| |||| ||||||| |
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| T |
8788263 |
actaaacacacaaagcat--agatgtgtcatgaaaaatgttaaaaattaactgtttgaaattgtttcttt |
8788196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 670
Target Start/End: Complemental strand, 8788153 - 8787997
Alignment:
| Q |
510 |
catttgcaaaatatgactaatacagagatatactgtgcaaagttgaagacacttactgatgaatcatatgtctttgaagaaacgaaaggggtgtttccac |
609 |
Q |
| |
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|||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||| | | ||| |
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| T |
8788153 |
cattagcaaaatatgactaatacagg----tacactgcaaagttgaagacacttacagatgaatcatatctttttgaaggaacgaaaggggtatcttcac |
8788058 |
T |
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| Q |
610 |
acattggataagaatccaaaataattagatctgaatcagaggaattattctcatcctccac |
670 |
Q |
| |
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| | | |||||| ||||||||| | | ||||| ||| ||| ||||| | |||||||||| |
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| T |
8788057 |
aaacttgataaggttccaaaatagtaacatctggatcggagcaattacccccatcctccac |
8787997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 681
Target Start/End: Complemental strand, 8782395 - 8782228
Alignment:
| Q |
510 |
catttgcaaaatatgactaatacagagatatactgtgcaaagttgaagacacttactgatgaatcatatgtctttgaagaaacgaaaggggtgtttccac |
609 |
Q |
| |
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|||||| ||||||| ||||||||||| | | ||| ||||||||||| |||||| |||||||||||| | ||||||| |||||||||| | | ||| |
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| T |
8782395 |
catttgaaaaatattactaatacagaaaca----gtgtaaagttgaagaaacttacagatgaatcatatatatttgaaggaacgaaagggttagcttcac |
8782300 |
T |
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| Q |
610 |
acattggataagaatccaaaataattagatctgaatcagaggaattattctcatcctccacattggatgtgt |
681 |
Q |
| |
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| ||||||||||| | ||||||| ||| ||||| ||| |||| | || | |||||||||| |||||||||| |
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| T |
8782299 |
aaattggataagatttcaaaatagttacatctggatcggagggaatacccccatcctccaccttggatgtgt |
8782228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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