View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_high_10 (Length: 409)
Name: NF5803_high_10
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 12103091 - 12103486
Alignment:
| Q |
13 |
tcatcagtgcactccatcttttccaattgtttccatctagtgccagcagagttgatggaacaaaacctccattggtacccatgattccttcacaagaaac |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
12103091 |
tcatcaatgcactccatcttttccaattgtttccatctagtgccagcagatttgatagaaccaaacctccattggtacccatgattcctacacaagaaac |
12103190 |
T |
|
| Q |
113 |
tctgaatttttcacacacttcactcggtatttcccagaaaa-cacccctcacaagttcaccagtgt---ttccctaaatctgaaccaggctctagatgcc |
208 |
Q |
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||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| |
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| T |
12103191 |
tctgaattttt-acacacttcactctgtatttcccataaaatcacccctcacaagttcacccgtgttaattccctgaatctgaaccaggctctagatgcc |
12103289 |
T |
|
| Q |
209 |
aattattagtgcctcagttgtttcttgctttgcaagcaatcacat---------attaatggaggaagaagaagatgaaagtagttagaggatgttacag |
299 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12103290 |
aattattagtgcataagttgtttcttgctttgcaagcaatcacatatttgaaagattaatggaggaagaagaagatgaaagtagttagaggatgttacag |
12103389 |
T |
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| Q |
300 |
agagagaatagagtattggaaagttgttattgtttcattgattggtgaatagagaaactacaaagtatttatatacataacttagagagaaaatctt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12103390 |
agagagaatagagtattggaaagttgttattgtttcattgattgacgaatagagaaactacaaagtatttatatacataacttagagagcaaatctt |
12103486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 26628330 - 26628711
Alignment:
| Q |
13 |
tcatcagtgcactccatcttttccaattgtttccatctagtgccagcagagttgatggaacaaaacctccattggtacccatgattccttcacaagaaac |
112 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| || || | ||||||||||||||||||||||||||||| ||||| || | |||||||| |
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| T |
26628330 |
tcatcagtgcactccatctttcccaattgtttccatctagtgtcaacatatttgatggaacaaaacctccattggtacccgtgattgctactcaagaaac |
26628429 |
T |
|
| Q |
113 |
tctgaatttttcacacacttcactcggtatttcccagaaaa-cacccctcacaagttcaccagtgtttccctaaatctgaacc--aggctctagatgcca |
209 |
Q |
| |
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||| || |||||||||||||||||| || |||||||||||| |||||| |||||||||| |||||||||| |||||||||| ||| |||||||| || |
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| T |
26628430 |
tcttaa-ttttcacacacttcactc-gtgtttcccagaaaatcacccccaacaagttcacttgtgtttccctgaatctgaacccaaggatctagatgtca |
26628527 |
T |
|
| Q |
210 |
attattagtgcctcagttgtttcttgctttgcaagcaatcac---------atattaatggaggaagaagaagatgaaagtagttagaggatgttacaga |
300 |
Q |
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||||||| || || |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
26628528 |
gttattagcgcaacacttgtttcttgttttgcaagcaatcacagttttgaaagattaatggaggaagaagaagatgaaagaggttagagtttgttatgga |
26628627 |
T |
|
| Q |
301 |
gagagaatagagtattggaaagttgttattgtttcattgattggtgaatagagaaactacaaagtatttatatacataacttagag |
386 |
Q |
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||||||| ||||||||||||||||||||| |||||||||| | ||| ||| | |||||| |||||||||||||||||||||| |
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| T |
26628628 |
gagagaagagagtattggaaagttgttat--gttcattgattaattaattgaggagttacaaaatatttatatacataacttagag |
26628711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 387
Target Start/End: Original strand, 29982555 - 29982675
Alignment:
| Q |
264 |
gaagaagaagatgaaagtagttagaggatgttacagagagagaatagagtattggaaagttgttattgtttcattgattggtgaatagagaaactacaaa |
363 |
Q |
| |
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||||||||||| || ||| ||| ||| ||||| |||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||| |
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| T |
29982555 |
gaagaagaagaggagggtaattacaggttgttatggagagagaatagagtattggaaagtt-ttatgatttcattgattgatgaatagag--tttacatg |
29982651 |
T |
|
| Q |
364 |
gtatttatatacataacttagaga |
387 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
29982652 |
gtatttatatacataacttagaga |
29982675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 384
Target Start/End: Original strand, 10878490 - 10878604
Alignment:
| Q |
267 |
gaagaagatgaaagtagttagaggatgttacagagagagaatagagtattggaaagttgttattgtttcattgattggtgaatagagaaactacaaagta |
366 |
Q |
| |
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|||||||| || |||| ||||||| ||||| |||||||||| | |||||||||||||||||||| ||||||||||| |||||||||| |||| |||| |
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| T |
10878490 |
gaagaagaagagagtaattagaggttgttatagagagagaaga-agtattggaaagttgttatt--ttcattgattgatgaatagagagtttacatagta |
10878586 |
T |
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| Q |
367 |
tttatatacataacttag |
384 |
Q |
| |
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|||||||||||||||||| |
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| T |
10878587 |
tttatatacataacttag |
10878604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 267 - 386
Target Start/End: Original strand, 41645352 - 41645469
Alignment:
| Q |
267 |
gaagaagatgaaagtagttagaggatgttacagagagagaatagagtattggaaagttgttattgtttcattgattggtgaatagagaaactacaaagta |
366 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| |||||||||||| |||||| |||| |||||| ||| |||||| |||| |||||| || |
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| T |
41645352 |
gaagaagatgaaagtagttagaggttgttagggagagataatagagtattgaaaagttattat--gttcattaattaatgaataaagaagttacaaaata |
41645449 |
T |
|
| Q |
367 |
tttatatacataacttagag |
386 |
Q |
| |
|
||||||||||| |||||||| |
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| T |
41645450 |
tttatatacatgacttagag |
41645469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 41481377 - 41481307
Alignment:
| Q |
258 |
atggaggaagaagaagatgaaagtagttagaggatgttacagagagagaatagagtattggaaagttgtta |
328 |
Q |
| |
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||||||||||||||||| || |||||||||||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
41481377 |
atggaggaagaagaagaagagagtagttagaggttgttagggagagagaataaagtattggaaagttgtta |
41481307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 348
Target Start/End: Complemental strand, 36949000 - 36948783
Alignment:
| Q |
142 |
tttcccagaaaa-cacccctcacaagttcaccagtgtttccctaaatctgaacc--aggctctagatgccaattattagtgcctcagttg-tttcttgct |
237 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||| || |||||| | |||||||||| |||||||||| || ||| ||| |||||| | |
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| T |
36949000 |
tttcccaaaaaatcacccctcacaagttcactcgtgtttccctgtatgtgaacccaaagctctagatgtcaattattagcgcatcaattgatttcttatt |
36948901 |
T |
|
| Q |
238 |
ttgcaagcaatc--------acatattaatggaggaagaagaagatgaaagtagttagaggatgttacagagagagaat-agagtattggaaagttgtta |
328 |
Q |
| |
|
|||||||||||| | | |||||||||||||||| ||| |||| | |||||||| ||||| ||||||||||| | | |||||||||||||||| |
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| T |
36948900 |
ttgcaagcaatcctagttttagagattaatggaggaagaataaggtgaagttggttagaggttgttaaagagagagaataaaaatattggaaagttgtta |
36948801 |
T |
|
| Q |
329 |
ttgtttcattgattggtgaa |
348 |
Q |
| |
|
| |||||||||||| |||| |
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| T |
36948800 |
t--tttcattgattgttgaa |
36948783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 36020263 - 36020190
Alignment:
| Q |
64 |
ttgatggaacaaaacctccattggtacccatgattccttcacaagaaactctgaatttttcacacacttcactcg |
138 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| || ||||||| |||||| || ||||||||||||||| |
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| T |
36020263 |
ttgaaggaacaaaacctccattagtacccatgattgctcagcaagaaattctgaa-ttcacacacacttcactcg |
36020190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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