View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_high_14 (Length: 360)
Name: NF5803_high_14
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 141 - 341
Target Start/End: Complemental strand, 10331367 - 10331166
Alignment:
| Q |
141 |
caacatatcaaatatcccaacaatccattatatcgaccgaatcctttnnnnnnnnn-tcgaataaatactttctaatagatagtataagatattctatta |
239 |
Q |
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| T |
10331367 |
caacatatcaaatatcccaacaacccattacatcgactgaatcctttcaaaaaaaaattgaataaatactttctaatagatagtataagatattctatta |
10331268 |
T |
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| Q |
240 |
tcttgtttcataatggataatttggtttagtcctattcaacnnnnnnnnnnnntcggtttagtcctttgtcacttgactatgcttataattccatacctt |
339 |
Q |
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| T |
10331267 |
tcttgtttcataatggataatttggtttagtcctattcaacaaaaaataaaaatcggtttagtcctttgtcacttgactatgcttataattccatacctt |
10331168 |
T |
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| Q |
340 |
cg |
341 |
Q |
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| T |
10331167 |
cg |
10331166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 10331472 - 10331382
Alignment:
| Q |
13 |
aaaatctattagaaaatgctgaaagatggtctttttgcttgtcataaataaaaatactaaggctgagaagtggagaattacgtcttatcaa |
103 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
10331472 |
aaaatatattagaaaatgctgaaagatggtctttttgcttgtcataaataaaaatactaagactgagaagtggagaataacgtcttatcaa |
10331382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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