View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_high_23 (Length: 258)
Name: NF5803_high_23
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 43750069 - 43749835
Alignment:
| Q |
1 |
tacctacttacattttgtgtcagtagaaaaacaatccaaattaaagaatgaaaaagagatgaaagaaagaattctttacaagggttccatcttgaatatt |
100 |
Q |
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| T |
43750069 |
tacctacttacattttgtgtcagtagaaaaacaatccaaattaaagaatgaaaaagagatgaaagaaagaattctttacaagggttccatcttgaatatt |
43749970 |
T |
|
| Q |
101 |
tgttgaggtaacaatcttaaagaaacggataaaagaatgcatatttcttcggttgcaagtcattgat-aatcttcagaattgtgatgaattgtattaatg |
199 |
Q |
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| T |
43749969 |
tgttgaggtaacaatcttaaagaaacggataaaagaatgcatatttcttgggttgcaagtcattgataaatcttcagaattgtgatgaattgtattaatg |
43749870 |
T |
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| Q |
200 |
gataccgatcgatcacctttcctgtgaatgggagg |
234 |
Q |
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| T |
43749869 |
gataccgatcgatcacctttcctgtgcatgggagg |
43749835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 49163690 - 49163639
Alignment:
| Q |
76 |
ttacaagggttccatcttgaatatttgttgaggtaacaatcttaaagaaacg |
127 |
Q |
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| T |
49163690 |
ttacaagggttccatcttgaatatttgttgaggtaacaatcttaaagaaacg |
49163639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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