View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5803_high_27 (Length: 249)
Name: NF5803_high_27
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_high_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 16003475 - 16003688
Alignment:
| Q |
1 |
ttgtctctagtatacaaataacatgccaatgtcacaactagtatattggatcccatcaataccagaagccaacaataacgttggaaaccaaaaacttact |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
16003475 |
ttgtctctagtatataaataacatgccaatgtcacaactagtatattggatccca-------------------ataacgttggaaaccaaaaatttact |
16003555 |
T |
|
| Q |
101 |
ccatggaaaatctagaagctaatccatctaaattgaaggacagaaccagaggaatacagaggaacacagaaatagcggtatgactcgacttgtggaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16003556 |
ccatggaaaatctagaagctaatccatctaaattgaaggacagaaccagaggaatacagaggaacacagaaatagcggtatgactcgacttgtggaggaa |
16003655 |
T |
|
| Q |
201 |
aatggaaccagggtgaatatttgatcaacaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
16003656 |
aatggaaccagggtgaatatttgatcaacaaca |
16003688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 26794712 - 26794846
Alignment:
| Q |
1 |
ttgtctctagtatacaaataacatgccaatgtcacaactagtatattggatcccatcaataccagaagccaacaataacgttggaaaccaaaaacttact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26794712 |
ttgtctctagtatacaaataacatgccaatgtcacaactagtatattggatcccatcaataccagaagccaacaataacgttggaaaccaaaaacttact |
26794811 |
T |
|
| Q |
101 |
ccatggaaaatctagaagctaatccatctaaattg |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
26794812 |
ccatggaaaatctagaagctaatccatctaaattg |
26794846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 26794968 - 26795068
Alignment:
| Q |
133 |
ttgaaggacagaaccagaggaatacagaggaacacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaac |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
26794968 |
ttgaaggacagaaccagaggaatacagaggaacacataaatagcggtatgactcgacttgtggaggaaaacggaactagggtgaatatttgatcaacaac |
26795067 |
T |
|
| Q |
233 |
a |
233 |
Q |
| |
|
| |
|
|
| T |
26795068 |
a |
26795068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 40721686 - 40721820
Alignment:
| Q |
1 |
ttgtctctagtatacaaataacatgccaatgtcacaactagtatattggatcccatcaataccagaagccaacaataacgttggaaaccaaaaacttact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40721686 |
ttgtctctagtatacaaataacatgccaatgtcacaactagtatatcggatcccatcaataccagaagccaacaataatgttggaaaccaaaaacttact |
40721785 |
T |
|
| Q |
101 |
ccatggaaaatctagaagctaatccatctaaattg |
135 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
40721786 |
ccgtggaaaatctagaagctaatccatctaaattg |
40721820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 40721956 - 40722032
Alignment:
| Q |
157 |
cagaggaacacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaaca |
233 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||| |
|
|
| T |
40721956 |
cagaggaatacggaaatagcggtatgactcgacttgtcgtggaaaacgaaaccagggtgaatatttgatcaacaaca |
40722032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 27222884 - 27222822
Alignment:
| Q |
157 |
cagaggaacacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaata |
219 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27222884 |
cagaggaatacagaaatagcagtatgactcgacttgtggaggaaaacggaaccagggtgaata |
27222822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 8530906 - 8530787
Alignment:
| Q |
23 |
atgccaatgtcacaactagtatattggatcccatcaataccagaagccaacaataac--------gttggaaaccaaaaacttactccatggaaaatcta |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| || ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
8530906 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaatacaagttggaaac-aaaaacctactccatggaaaatcta |
8530808 |
T |
|
| Q |
115 |
gaagctaatccatctaaattg |
135 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
8530807 |
gaagccaatccatctaaattg |
8530787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 5155407 - 5155461
Alignment:
| Q |
80 |
gttggaaaccaaaaacttactccatggaaaatctagaagctaatccatctaaattg |
135 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
5155407 |
gttggaaac-aaaaacctactccatggaaaatctagaagccaatctatctaaattg |
5155461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 5155332 - 5155385
Alignment:
| Q |
23 |
atgccaatgtcacaactagtatattggatcccatcaataccagaagccaacaat |
76 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| |
|
|
| T |
5155332 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaat |
5155385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University