View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_high_7 (Length: 433)
Name: NF5803_high_7
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 41447725 - 41447937
Alignment:
| Q |
19 |
attatacctctatccttacaacaattaaaaagatcaattttaaccttttccaaaatcacattcatccaccccatcaagaaatgaaaatagttgacatgtt |
118 |
Q |
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| T |
41447725 |
attatacctctatccttacaacaattaaaaatatcaattttaaccttttccaaaatcacattcatccaccccgtcaagaaatgaaaatagttgacatgtt |
41447824 |
T |
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| Q |
119 |
ttccagattcttagaagttgaaattgaacatcaagacaaggatcaatggtgaaaactataggtc----atatgttctaataaactttgattctctccctt |
214 |
Q |
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| T |
41447825 |
ttccagatttttagaagttgaaattgaacatcaagacaaggatcaatgaggaaaactataggtcatatatatgttctaataaactttgattctctccttt |
41447924 |
T |
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| Q |
215 |
caatttcaacaat |
227 |
Q |
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| T |
41447925 |
caatttcaacaat |
41447937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 233 - 421
Target Start/End: Original strand, 41448042 - 41448233
Alignment:
| Q |
233 |
acaagaatccaatcttccaacttcacttgtcctcttctcccttccccaatttcaatcaaacttttatactgg-cattgaga--ttgatttaaccacattg |
329 |
Q |
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| T |
41448042 |
acaagaatccaatcttccaacttcacttgtcctcttctcccttccccaatttcaatcaaacttttatactgggcattgagagattgatttaaccacattg |
41448141 |
T |
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| Q |
330 |
attgcttacttgtgcataatttgcgatttaagattcaattatcttgaatggttatattggaaatctataccagggatttaattttaccccta |
421 |
Q |
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| T |
41448142 |
attgcttacttgtgcataatttgcgatttaagattcaattatcttgaatggttctattggaaatctataccagggatttaattttaccccta |
41448233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 31409494 - 31409538
Alignment:
| Q |
38 |
aacaattaaaaagatcaattttaaccttttccaaaatcacattca |
82 |
Q |
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| T |
31409494 |
aacaatcaaaaatatcaattttaacccttttcaaaatcacattca |
31409538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 33568104 - 33568140
Alignment:
| Q |
42 |
attaaaaagatcaattttaaccttttccaaaatcaca |
78 |
Q |
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| T |
33568104 |
attaaaaatatcaattttaacctttttcaaaatcaca |
33568140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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