View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_11 (Length: 407)
Name: NF5803_low_11
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 31218565 - 31218952
Alignment:
| Q |
13 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctc--caca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31218565 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
31218664 |
T |
|
| Q |
111 |
acacgcccctgagactaaactgacgcctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcctctccactgtaaatg |
210 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
31218665 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
31218764 |
T |
|
| Q |
211 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttc |
310 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218765 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttc |
31218864 |
T |
|
| Q |
311 |
aatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgactggactctccattttttcctttg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
31218865 |
aatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgattggactctccactttttcctttg |
31218952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 31212810 - 31213197
Alignment:
| Q |
13 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctc--caca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31212810 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
31212909 |
T |
|
| Q |
111 |
acacgcccctgagactaaactgacgcctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcctctccactgtaaatg |
210 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
31212910 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
31213009 |
T |
|
| Q |
211 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttc |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213010 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttc |
31213109 |
T |
|
| Q |
311 |
aatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgactggactctccattttttcctttg |
398 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
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| T |
31213110 |
aaacttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgaatggaatctccactttttcctttg |
31213197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 47896661 - 47896277
Alignment:
| Q |
13 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctc--caca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
47896661 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattgtctcaccaca |
47896562 |
T |
|
| Q |
111 |
acacgcccctgagactaaactgacgcctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcctctccactgtaaatg |
210 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
47896561 |
acacgc---tgagactaaacttacgtctgatgccatctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
47896465 |
T |
|
| Q |
211 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttc |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47896464 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttc |
47896365 |
T |
|
| Q |
311 |
aatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgactggactctccattttttcctttg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
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|
| T |
47896364 |
aatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgattggattctccactttttcctttg |
47896277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 213 - 383
Target Start/End: Original strand, 4958207 - 4958377
Alignment:
| Q |
213 |
gtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttcaa |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| |||||||||| || |||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
4958207 |
gtgggtggagcaactgttgaccttttcttcttgcgcccaccagctgttgaactgtctgaatgtccttcactatcagcagcattctgctcaccttcagcaa |
4958306 |
T |
|
| Q |
313 |
tcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgactggactct |
383 |
Q |
| |
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|||||||| ||||||||||| |||||||||||| ||| | || |||||||||||||||||||||||||| |
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|
| T |
4958307 |
tcttagaagtttgtgcacgttgtcgcttccttgtactgttaccagtagctttctcagtgtgactggactct |
4958377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 4957794 - 4957824
Alignment:
| Q |
31 |
actaactaatatttcaatttgaagcaacctt |
61 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
4957794 |
actaactaatatttcaatttgaagcaacctt |
4957824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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