View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5803_low_12 (Length: 391)
Name: NF5803_low_12
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 10887841 - 10888204
Alignment:
| Q |
18 |
cttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctttggcacgactcctccggtcaattttgcagaaatgtcgac |
117 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||| |
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| T |
10887841 |
cttccatggacataactttttggtcagatatcttcggtggtgttaacataggtagcttcttcggcacaactcctccggtgggttttgcagaattgtcgac |
10887940 |
T |
|
| Q |
118 |
aacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatc |
217 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10887941 |
tacttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatc |
10888040 |
T |
|
| Q |
218 |
tcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaa |
317 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888041 |
tcagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaa |
10888140 |
T |
|
| Q |
318 |
cagcgtttgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctgctgcctttg |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888141 |
cagcgtttgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctgctgcctttg |
10888204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 10866524 - 10866214
Alignment:
| Q |
18 |
cttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctttggcacgactcctccggtcaattttgcagaaatgtcgac |
117 |
Q |
| |
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||||||||||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||| |||| ||||||| || |||||||| |||||| |
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| T |
10866524 |
cttccatggacataactttttggtcggagattttgggtggaggtaacgtaggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtct-- |
10866427 |
T |
|
| Q |
118 |
aacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatc |
217 |
Q |
| |
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||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | |||| |
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| T |
10866426 |
-------tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatc |
10866334 |
T |
|
| Q |
218 |
tcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaa |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |
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| T |
10866333 |
tcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaa |
10866234 |
T |
|
| Q |
318 |
cagcgtttgttaaatacagt |
337 |
Q |
| |
|
|| | |||||||| |||||| |
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|
| T |
10866233 |
caacatttgttaagtacagt |
10866214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 10873781 - 10874091
Alignment:
| Q |
18 |
cttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctttggcacgactcctccggtcaattttgcagaaatgtcgac |
117 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||| |||| ||||||| || |||||||| |||||| |
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| T |
10873781 |
cttccatggacataactttttggtcggagattttgggtggaggtaacgtaggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtct-- |
10873878 |
T |
|
| Q |
118 |
aacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatc |
217 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | |||| |
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|
| T |
10873879 |
-------tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatc |
10873971 |
T |
|
| Q |
218 |
tcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaa |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |
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| T |
10873972 |
tcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaa |
10874071 |
T |
|
| Q |
318 |
cagcgtttgttaaatacagt |
337 |
Q |
| |
|
|| | |||||||| |||||| |
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|
| T |
10874072 |
caacatttgttaagtacagt |
10874091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 10878852 - 10879162
Alignment:
| Q |
18 |
cttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctttggcacgactcctccggtcaattttgcagaaatgtcgac |
117 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||| |||| ||||||| || |||||||| |||||| |
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| T |
10878852 |
cttccatggacataactttttggtcggagattttgggtggaggtaacgtaggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtct-- |
10878949 |
T |
|
| Q |
118 |
aacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatc |
217 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | |||| |
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|
| T |
10878950 |
-------tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatc |
10879042 |
T |
|
| Q |
218 |
tcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaa |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |
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| T |
10879043 |
tcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaa |
10879142 |
T |
|
| Q |
318 |
cagcgtttgttaaatacagt |
337 |
Q |
| |
|
|| | |||||||| |||||| |
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|
| T |
10879143 |
caacatttgttaagtacagt |
10879162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 10883923 - 10884233
Alignment:
| Q |
18 |
cttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctttggcacgactcctccggtcaattttgcagaaatgtcgac |
117 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||| |||| ||||||| || |||||||| |||||| |
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|
| T |
10883923 |
cttccatggacataactttttggtcggagattttgggtggaggtaacgtaggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtct-- |
10884020 |
T |
|
| Q |
118 |
aacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatc |
217 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | |||| |
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|
| T |
10884021 |
-------tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatc |
10884113 |
T |
|
| Q |
218 |
tcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaa |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
10884114 |
tcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaa |
10884213 |
T |
|
| Q |
318 |
cagcgtttgttaaatacagt |
337 |
Q |
| |
|
|| | |||||||| |||||| |
|
|
| T |
10884214 |
caacatttgttaagtacagt |
10884233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 104 - 344
Target Start/End: Complemental strand, 39676020 - 39675780
Alignment:
| Q |
104 |
gcagaaatgtcgacaacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaa |
203 |
Q |
| |
|
|||| |||||| ||||||| ||||| || ||||||||||||| |||||||||| ||| || ||||| ||||||||| | | |||| |||||||||| |
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|
| T |
39676020 |
gcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaa |
39675921 |
T |
|
| Q |
204 |
ctacagcaacaatctcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaa |
303 |
Q |
| |
|
||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| |
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|
| T |
39675920 |
ctagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaa |
39675821 |
T |
|
| Q |
304 |
gagaccaaagaaaacagcgtttgttaaatacagtgaagaag |
344 |
Q |
| |
|
|||||| ||||||| || ||||||||| || |||||||||| |
|
|
| T |
39675820 |
gagaccgaagaaaaaagtgtttgttaagtaaagtgaagaag |
39675780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 149 - 342
Target Start/End: Complemental strand, 10045968 - 10045775
Alignment:
| Q |
149 |
atgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggacgtggagaggtgtag |
248 |
Q |
| |
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|||||| || ||||||| ||||| |||||||| | |||||||| ||||||||||| ||| | |||||||||||| |||||| || || |||||||| | |
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|
| T |
10045968 |
atgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtgg |
10045869 |
T |
|
| Q |
249 |
aggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaaga |
342 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||| ||||| ||||||| ||||||||||| || |||||||| |
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|
| T |
10045868 |
aggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaaga |
10045775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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