View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_15 (Length: 342)
Name: NF5803_low_15
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 54848612 - 54848267
Alignment:
| Q |
1 |
aaaccgcatgaatgcggaagtgctagaaatattaaacaataattaacttatatatacaacatgaggaagaaagcagagtaatgaatgattctaaacacgt |
100 |
Q |
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| T |
54848612 |
aaaccgcatgaatgcggaagtgctagaaatattaaacaataattaacttatatatacaacatgaggaagaaagcagagtaatgaatgattctaaacacgt |
54848513 |
T |
|
| Q |
101 |
gtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaactacgttttagagcttgaa-------------------taaa |
181 |
Q |
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| T |
54848512 |
gtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaactacgttttagagcttgaataagataacagtgtcacgctaaa |
54848413 |
T |
|
| Q |
182 |
tttgtcaatcaaggtcaatccaaacatgtactgattcttgtgaacatccaaataattttaagcattgacgtatgaggtagttaattgagtgcaacttggc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54848412 |
tttgtcaatcaaggtcaatccaaacatgtactgattcttgtgaacatccaaataattttaagcattgacgtatgaggtagttaattgagtgcaacttggc |
54848313 |
T |
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| Q |
282 |
gcccttcgacaatgatatggattaaggttgatgaattcctttctat |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54848312 |
gcccttcgacaatgatatggattaaggttgatgaattccttcctat |
54848267 |
T |
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