View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_18 (Length: 323)
Name: NF5803_low_18
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 5 - 307
Target Start/End: Original strand, 42235573 - 42235884
Alignment:
| Q |
5 |
agggcacacaaagaaagagtcccactcatccagttacacagtgtagccacgtgcaatgagtctttgcttcaccatactactcacgtggcaccttttcata |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42235573 |
agggcacacaaagaaagagtcccactcatccagttacacagtgtagccacgtgcaatgagtctttgcttcaccatactactcacgtggcaccttttcata |
42235672 |
T |
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| Q |
105 |
accaaatgctgtaaatcattcacctactactactactttttaccatagaagaaaaaagaaaactcattcttcaatttccactct------------caca |
192 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42235673 |
accaaatgctgtaaatcattcac---ctactactactttttaccatagaagaaaaaagaaaactcattcttcaatttccactctcacaagccacaacaca |
42235769 |
T |
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| Q |
193 |
acaaatttactaccacagtaccactccattccaatttccattcctcaaaacaaaacaaatctcactcactctcccttttcacttctcaaaacaacttcaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42235770 |
acaaatttactaccacagtaccactccattccaatttccattcctcaaaacaaaacaaatctcactcactctcccttttcacttctcaaaacaacttcaa |
42235869 |
T |
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| Q |
293 |
caatcataaaataag |
307 |
Q |
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||||||||||||||| |
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| T |
42235870 |
caatcataaaataag |
42235884 |
T |
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