View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5803_low_20 (Length: 299)

Name: NF5803_low_20
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5803_low_20
NF5803_low_20
[»] chr6 (1 HSPs)
chr6 (1-299)||(32950253-32950550)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 32950550 - 32950253
Alignment:
Q  1 ggtttatgttttggccctttttagtcttttatttaaatattgatttaactgctctctgattataccacacaaaaggtaaacagaattcaccccaaaaaga 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950550 ggtttatgttttggccctttatagtcttttatttaaatattgatttaactgctctctgattataccacacaaaaggtaaacagaattcaccccaaaaaga 32950451  T
Q  101 atataaagaatatggttttcatttgtacacattattggagaagctgtttttcagtgggaacaatttggcatgttgcatatcatataaagaatttcattgt 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32950450 atataaa-aatatggttttcatttgtacacattattggagaagctgtttttcagtgggaacaatttggcatgttgcatatcatataaagagtttcattgt 32950352  T
Q  201 tttgaattttccaatatccaaatattattttcttgtcaaaatgataatacgaatgagtgctataatgcaattcaacttttacaatacaatcaaaacagt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950351 tttgaattttccaatatccaaatattattttcttgtcaaaatgataatacgaatgagtgctataatgcaattcaacttttacaatacaatcaaaacagt 32950253  T

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