View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5803_low_24 (Length: 252)
Name: NF5803_low_24
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 16003471 - 16003228
Alignment:
| Q |
1 |
ttaggataaactggtatccttttctgccatttgaagttgcttgaaagaattttcacatcagacctggctatagcagaatcaaatatggagaagac-gatt |
99 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
16003471 |
ttaggataaactggtatcattttctaccatttgaagctgcttgaaagaattttcacatcatacctggctatagcagaatcaattatggagaagacagatt |
16003372 |
T |
|
| Q |
100 |
tcatattgaattttcatatcatatattttggttagactgtttcagaaaaataaataaaagaagacagannnnnnnnnnnnnnnaaaacaaaagatatgct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
16003371 |
tcatattgaattttcatatcatatattttggttagactgttttagaaaaagaaataaaagaagaca-aaaaaaaaaaaaatttaaaacaaaagatatgct |
16003273 |
T |
|
| Q |
200 |
ttttaattttaattaaaaaggaagtgaacctacataagaataatc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16003272 |
ttttaattttaattaaaaaggaagtgaacctacataagaataatc |
16003228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26794708 - 26794544
Alignment:
| Q |
1 |
ttaggataaactggtatccttttctgccatttgaagttgcttgaaagaattttcacatcagacctggctatagcagaatcaaatatggagaagac-gatt |
99 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26794708 |
ttaggataaactggtatccttt-ctaccatttgaagctgcttgtaagaattttcacatcagacctggctatagcagaatcaaatatggagaagacagatt |
26794610 |
T |
|
| Q |
100 |
tcatattgaattttcatatcatatattttggttagactgtttcagaaaaataaataaaagaagaca |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
26794609 |
tcatattgaattttcatatcatatattttggttagattgtttcagaaaaagaaagaaaagaagaca |
26794544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 19397715 - 19397621
Alignment:
| Q |
1 |
ttaggataaactggtatccttttctgccatttgaagttgcttgaaagaattttcacatcaga-----cctggctatagcagaatcaaatatggag |
90 |
Q |
| |
|
|||||||||| ||||||| | |||| |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
19397715 |
ttaggataaattggtatcttattctaccatttgaagctgcttgaaagaattttcatatcagatgcattgtggctatagcagaatcaaatatggag |
19397621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 26794526 - 26794489
Alignment:
| Q |
184 |
aaacaaaagatatgctttttaattttaattaaaaagga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26794526 |
aaacaaaagatatgctttttaattttaattaaaaagga |
26794489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 40721682 - 40721439
Alignment:
| Q |
1 |
ttaggataaactggtatccttttctgccatttgaagttgcttgaaagaattttcacatcagacctggctatagcagaatcaaatatggagaagac-gatt |
99 |
Q |
| |
|
|||| ||||| || ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40721682 |
ttagaataaattgttatccttttctaccatttgaagctgcttgaaagaattttcacatctgacctggctatagcagaatcaaatatggagaagacagatt |
40721583 |
T |
|
| Q |
100 |
tcatattgaattttc--atatcatatattttggttagactgtttcagaaaaataaataaaagaagacagannnnnnnnnnnnnnnaaaacaaaagatatg |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||| |
|
|
| T |
40721582 |
tcatattgaattttcatatatcatatattttggttagactgtttcagaaaaagaaagaaaagaagacata---tattttttttttaaaacaaaagatatg |
40721486 |
T |
|
| Q |
198 |
ctttttaattttaattaaaaaggaagtgaacctacataagaataatc |
244 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40721485 |
ctttttaattttaattaaaaaggaagtaaacctacataagaataatc |
40721439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 5155241 - 5155201
Alignment:
| Q |
13 |
ggtatccttttctgccatttgaagttgcttgaaagaatttt |
53 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
5155241 |
ggtatcttattctaccatttgaagttgcttgaaagaatttt |
5155201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University