View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_25 (Length: 250)
Name: NF5803_low_25
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 40625730 - 40625826
Alignment:
| Q |
139 |
catcaactcatttgaatgttctttatcagtgtattaatgatttggtgttttgtttttgttatgaaaaggaccctcatgtagggatacagtagaaagt |
235 |
Q |
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| T |
40625730 |
catcaactcatttgaatgttctttatcagtgtattaatgatttggtgttttgtttttgttatgaaaaggaccctcatgtagggatacagtagaaagt |
40625826 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 40625602 - 40625646
Alignment:
| Q |
14 |
aaaatagaacaaaatcaaaa-tgactaatgtttattataacttaa |
57 |
Q |
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| T |
40625602 |
aaaatagaacaaaataaaaaatgactaatgtttattataacttaa |
40625646 |
T |
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