View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_26 (Length: 250)
Name: NF5803_low_26
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2839279 - 2839518
Alignment:
| Q |
1 |
cacaaagctgatgtatttgtttatacgcctcagcagcttcttcataattttggcagtcagcgcatttacaacaattccaatttgctaattaagcactact |
100 |
Q |
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| T |
2839279 |
cacaaagctgatgtatttgtttatacgcctcagcagcttcttcataattttggcagtcagcgcatttacaacaattccaatttgctaattaagcactact |
2839378 |
T |
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| Q |
101 |
gcatcattattattggttttggtagcatattagtttagcgcatttatatcgatagctttcatattttatgttaattgtatgtatagactgggtttgtgtg |
200 |
Q |
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| T |
2839379 |
gcatcattattattggttttggtagcatattagtttagcgcatttatatcgatagctttcatattttatgttaattgtatgtatagactgggtttgtgtg |
2839478 |
T |
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| Q |
201 |
ttcgtttttggaaattgannnnnnncttgtctccattctt |
240 |
Q |
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| T |
2839479 |
ttcgtttttggaaattgatttttttcttgtctccattctt |
2839518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 18297270 - 18297116
Alignment:
| Q |
70 |
aacaattccaatttgctaattaagcactactgcatcattattat------tggttttggtagcatattagtttagcgcatttatatcgatagctttcata |
163 |
Q |
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| T |
18297270 |
aacaattccaatttgctaattaagcactcctgcatcattattataattatttgttttggtagcatattagtttagcgcatttatattgatagctttcata |
18297171 |
T |
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| Q |
164 |
ttttatgttaattgtatgtatagactgggtttgtgtgttcgtttttggaaattga |
218 |
Q |
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| T |
18297170 |
ttttacgtaaattgtatgtattgactggatttgtgtgttcatttttggaaattga |
18297116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 11689621 - 11689539
Alignment:
| Q |
5 |
aagctgatgtatttgtttatacgcctcagcagcttcttcataattttggcagtcagcgcatttacaacaattccaatttgctaatt |
90 |
Q |
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||||||||||||||||| ||| |||||| || |||| |||||||||||||| |||||||||||| ||| ||||||||| ||||| |
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| T |
11689621 |
aagctgatgtatttgttcatatgcctcaacaacttc---ataattttggcagttagcgcatttacatcaaatccaatttggtaatt |
11689539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 30688275 - 30688225
Alignment:
| Q |
2 |
acaaagctgatgtatttgtttatacgcctcagcagcttcttcataattttg |
52 |
Q |
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|||||| ||||||||||||| ||| ||||||||||||| || ||||||||| |
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| T |
30688275 |
acaaagttgatgtatttgttcatatgcctcagcagctttttgataattttg |
30688225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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