View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_28 (Length: 248)
Name: NF5803_low_28
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 37 - 219
Target Start/End: Complemental strand, 15303105 - 15302926
Alignment:
| Q |
37 |
gagacttggtcgatatatcttgtgaatttagatgaacaaaacaaaaatggttctcagaggagtggcctaagccgagtgatacaagaatgacaagtgactt |
136 |
Q |
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| T |
15303105 |
gagacttggtcgatatatcttgtgaatttagatgaacaaaacaaaaatggttctcagaggagtggcctaagccgagtgatacaagaatgacaagtgactt |
15303006 |
T |
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| Q |
137 |
gtcgagaaaaaacagggtgatgcttggtggatatcctcctatttgtgagggttataccttgagtgaaacaaggatggtactca |
219 |
Q |
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| T |
15303005 |
gtcgagaaaaaacagagtggtgcttggtggata---tcctatttgtgagggttatagcttgagcgaaacaaggatagtactca |
15302926 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 38618645 - 38618770
Alignment:
| Q |
1 |
attgatatcctacaacctaggcctccacgcgagaatgagacttggtcgatatatcttgtgaatttagatgaacaaaacaaaaatggttctcagaggagtg |
100 |
Q |
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| T |
38618645 |
attgatatcgtacaacccaggcctccaagcaagaatggcattcagtcgatacatcatgtgattttggacgagcatgacgaaaatggttccctcaggagtg |
38618744 |
T |
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| Q |
101 |
gcctaagccgagtgatacaagaatga |
126 |
Q |
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| T |
38618745 |
acctaagccaagtgatacaagaatga |
38618770 |
T |
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