View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_31 (Length: 238)
Name: NF5803_low_31
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2839219 - 2838998
Alignment:
| Q |
1 |
aaaatgcattcaattttctatagatttcatgcgttgctagttttgtttgtttagttaatgattatatgcaagaaaacttgtnnnnnnntcaaataattaa |
100 |
Q |
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| T |
2839219 |
aaaatgcattcaattttctatagatttcatgcgttgctagttttgtttgtttagttaatgattatatgcaagaaaacttgtaaaaaaatcaaataattaa |
2839120 |
T |
|
| Q |
101 |
ggaaaacatatcatgttgtgattctattgaattatctcttcattcaattacttattttctaatatcattttcctagttaaatcaattctagtttcctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839119 |
ggaaaacatatcatgttgtgattctattgaattatctcttcattcaattacttattttctaatatcattttcctagttaaatcaattctagtttcctctt |
2839020 |
T |
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| Q |
201 |
acattatcatggctcttgtaat |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
2839019 |
acattatcctggctcttgtaat |
2838998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30688343 - 30688410
Alignment:
| Q |
1 |
aaaatgcattcaattttctatagatttcatgcgttgctagttttgtttgtttagttaatgattatatg |
68 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
30688343 |
aaaatgcattcaattttctatagattttatgctttgctagttttgtttgtttagttaatgattatatg |
30688410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 50616931 - 50616874
Alignment:
| Q |
136 |
ctcttcattcaattacttattttctaatatcattttcctagttaaatcaattctagtt |
193 |
Q |
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||||| ||||||||| |||||||||||||||| |||| |||||||||||| |||||| |
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| T |
50616931 |
ctcttgattcaattatttattttctaatatcactttctcagttaaatcaatgctagtt |
50616874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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