View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_32 (Length: 228)
Name: NF5803_low_32
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 32984521 - 32984315
Alignment:
| Q |
19 |
gtatagtgtcattttcatccaatttcttacttacatcatcagtctattctcttatttgaaataaaaaatatatatcatcattctactctc---------- |
108 |
Q |
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| T |
32984521 |
gtatagtgtcattttcatccaatttcttacttacatcatcagtctattctcttatttgaaataaaaaatatatatcatcattctactctctaagcataag |
32984422 |
T |
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| Q |
109 |
--taagtacagnnnnnnnncttccacaaattaccaataaaaagaaatttttgttgtgtttatgcaaatcacatcaaattttttaaaatgttatgaaagaa |
206 |
Q |
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| T |
32984421 |
agtaagtacagttttttttcttccataaattaccattaaaaagaaatttgtgttgtgtttatgcaaatcacatcaaaatttctaaaatgttatgaaagaa |
32984322 |
T |
|
| Q |
207 |
gtctgtg |
213 |
Q |
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|||||| |
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| T |
32984321 |
atctgtg |
32984315 |
T |
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