View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5803_low_33 (Length: 227)

Name: NF5803_low_33
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5803_low_33
NF5803_low_33
[»] chr4 (16 HSPs)
chr4 (1-170)||(47606424-47606596)
chr4 (62-148)||(29833514-29833601)
chr4 (94-144)||(1273353-1273403)
chr4 (70-171)||(4373495-4373599)
chr4 (94-147)||(37559141-37559194)
chr4 (62-144)||(15446553-15446636)
chr4 (62-148)||(29834319-29834406)
chr4 (100-162)||(53757908-53757971)
chr4 (94-144)||(5688557-5688607)
chr4 (70-139)||(23153156-23153226)
chr4 (94-144)||(26788668-26788718)
chr4 (94-144)||(33377284-33377334)
chr4 (94-144)||(55953772-55953822)
chr4 (94-162)||(53757503-53757571)
chr4 (94-129)||(44128254-44128289)
chr4 (96-144)||(3217532-3217580)
[»] scaffold0012 (2 HSPs)
scaffold0012 (1-170)||(243412-243584)
scaffold0012 (1-170)||(242564-242736)
[»] chr1 (12 HSPs)
chr1 (1-170)||(6709789-6709961)
chr1 (1-151)||(6710649-6710801)
chr1 (94-143)||(25786115-25786164)
chr1 (62-144)||(2971846-2971929)
chr1 (62-148)||(25889379-25889466)
chr1 (62-134)||(14391163-14391236)
chr1 (94-147)||(47411368-47411421)
chr1 (94-139)||(52181225-52181270)
chr1 (99-143)||(25787089-25787133)
chr1 (62-144)||(48973345-48973428)
chr1 (94-144)||(16217586-16217636)
chr1 (62-139)||(34531815-34531893)
[»] chr3 (20 HSPs)
chr3 (1-169)||(9769326-9769500)
chr3 (3-170)||(9776976-9777148)
chr3 (28-170)||(33149602-33149748)
chr3 (1-170)||(29822576-29822751)
chr3 (94-171)||(29821434-29821511)
chr3 (94-170)||(382891-382967)
chr3 (62-144)||(29536859-29536942)
chr3 (99-147)||(42632849-42632897)
chr3 (94-144)||(47808027-47808077)
chr3 (94-144)||(51825541-51825591)
chr3 (94-147)||(42633806-42633859)
chr3 (94-170)||(33150600-33150676)
chr3 (95-147)||(41387354-41387406)
chr3 (2-144)||(52293352-52293492)
chr3 (62-144)||(12060785-12060868)
chr3 (62-144)||(47854633-47854716)
chr3 (62-144)||(48825959-48826042)
chr3 (94-148)||(2124171-2124225)
chr3 (98-143)||(47806964-47807009)
chr3 (62-129)||(39287611-39287679)
[»] chr5 (3 HSPs)
chr5 (94-170)||(11431385-11431461)
chr5 (94-144)||(1663334-1663384)
chr5 (62-121)||(4567120-4567180)
[»] chr8 (6 HSPs)
chr8 (168-227)||(3171047-3171106)
chr8 (94-143)||(27750541-27750590)
chr8 (94-144)||(3237563-3237613)
chr8 (94-143)||(38589967-38590016)
chr8 (62-139)||(8096451-8096529)
chr8 (94-144)||(31624052-31624102)
[»] chr6 (8 HSPs)
chr6 (8-170)||(9754148-9754316)
chr6 (94-170)||(28928475-28928551)
chr6 (4-170)||(28930937-28931109)
chr6 (94-171)||(4030266-4030343)
chr6 (97-170)||(4030786-4030859)
chr6 (5-170)||(24546891-24547062)
chr6 (93-144)||(16269536-16269587)
chr6 (67-109)||(17358980-17359023)
[»] chr2 (9 HSPs)
chr2 (94-170)||(15269012-15269088)
chr2 (67-166)||(18342863-18342965)
chr2 (62-144)||(41312647-41312730)
chr2 (108-170)||(18343824-18343886)
chr2 (62-144)||(3665371-3665454)
chr2 (93-144)||(6208984-6209035)
chr2 (62-140)||(14510415-14510494)
chr2 (62-144)||(33836916-33836999)
chr2 (62-144)||(42246737-42246820)
[»] chr7 (10 HSPs)
chr7 (62-148)||(30223863-30223950)
chr7 (94-148)||(22061715-22061769)
chr7 (94-144)||(35128112-35128162)
chr7 (62-148)||(30222788-30222875)
chr7 (62-144)||(41126386-41126469)
chr7 (94-144)||(22060609-22060659)
chr7 (101-170)||(48754116-48754185)
chr7 (62-129)||(41618385-41618453)
chr7 (67-144)||(33458456-33458534)
chr7 (59-144)||(36673719-36673805)
[»] scaffold0178 (1 HSPs)
scaffold0178 (62-144)||(2151-2234)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 47606424 - 47606596
Alignment:
Q  1 aagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctattgtaaatt--gtg 97  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||  |||    
T  47606424 aagatgaagattgttggtgatttttaattttaggaaattcaagacaaacggggaaagattataaatgatcatatgttgtgagtttattgtaaattttgtg 47606523  T
Q  98 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47606524 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagatttaacggttttagcaaaaaa 47606596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 29833601 - 29833514
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 148  Q
    ||||||| |||||||||||||| |||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||||||    
T  29833601 aaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaattgacatgtggcaag 29833514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 1273353 - 1273403
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  1273353 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgg 1273403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 4373599 - 4373495
Alignment:
Q  70 atatgttgtgagtctattgtaaat--tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaaga-cttaacggttttagcaa 166  Q
    |||||||||||||| |||||| |   ||||||||||| ||||||| || || |||||||||||||| |||||||||| ||||  ||||||| ||| ||||    
T  4373599 atatgttgtgagtccattgtataccatgtgtgcttttcaaatccagccattaatcaccaatcctaaatgacacgtggaaagaggttaacggattttgcaa 4373500  T
Q  167 aaaac 171  Q
    |||||    
T  4373499 aaaac 4373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 37559194 - 37559141
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 147  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||| |||||||    
T  37559194 tgtgtgctttttaaatccaaccgttgatcaccaattttaagtgacatgtggcaa 37559141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 15446553 - 15446636
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||| | ||||||   |||||| ||||| ||||| |||||||||||||||||| ||| ||||| ||||    
T  15446553 aaatgatcatatgttgtgagcccattgtatggttgtgtacttttaaaatcaaacccttgatcaccaatcttaaatgacatgtgg 15446636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 29834319 - 29834406
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 148  Q
    ||||||| |||||||||||||| |||||| | |||||| ||||| ||||  | |||||||||||||||| ||| ||||| ||||||||    
T  29834319 aaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatatagcccttgatcaccaatcttaaatgacatgtggcaag 29834406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 53757908 - 53757971
Alignment:
Q  100 ctttttaaatccaaccctt-gatcaccaatcctaagtgacacgtggcaagacttaacggtttta 162  Q
    ||||||||||||||||||| ||||| ||||| ||| ||||||||| ||||| ||||||||||||    
T  53757908 ctttttaaatccaaccctttgatcatcaatcttaaatgacacgtgccaagagttaacggtttta 53757971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 5688557 - 5688607
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||| ||||||||||| ||||||| ||||| ||||||||||||||    
T  5688557 tgtgtgctttataaatccaaccgttgatcatcaatcttaagtgacacgtgg 5688607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 23153156 - 23153226
Alignment:
Q  70 atatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgaca 139  Q
    |||||||||||||  |||||| ||||||||| |||| ||||||||||||||||||  |||||||| |||||    
T  23153156 atatgttgtgagttcattgtataattgtgtgtttttcaaatccaacccttgatcattaatcctaaatgaca 23153226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 26788718 - 26788668
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  26788718 tgtgtgctttttaaattcaaccgttgatcaccaatcttaactgacacgtgg 26788668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 33377284 - 33377334
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||||| ||||||||||||| |||  |||||||||    
T  33377284 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaacgacacgtgg 33377334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 55953772 - 55953822
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  55953772 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtgg 55953822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 53757571 - 53757503
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggtttta 162  Q
    ||||||||||||| |||||||| ||||| | ||||| ||| ||||  ||||||||||||||||| ||||    
T  53757571 tgtgtgctttttagatccaacctttgattatcaatcttaaatgacttgtggcaagacttaacggattta 53757503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 44128254 - 44128289
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatc 129  Q
    |||||||||||||||||||||| |||||||||||||    
T  44128254 tgtgtgctttttaaatccaaccgttgatcaccaatc 44128289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 3217532 - 3217580
Alignment:
Q  96 tgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||| ||||||| ||||  ||| ||||||||||    
T  3217532 tgtgctttttaaatccaaccgttgatcatcaattttaactgacacgtgg 3217580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 243412 - 243584
Alignment:
Q  1 aagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctattgtaaatt--gtg 97  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||  |||    
T  243412 aagatgaagattgttggtaatttttaattttaggaaattcaagacaaacagggaaagattataaatgatcatatgttgtgagtctatcgtaaattttgtg 243511  T
Q  98 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  243512 tgctttttaaatccaatccttgatcactaatcctaagtgacacgtggcaagacttaacgattttagcaaaaaa 243584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 242736 - 242564
Alignment:
Q  1 aagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctattgtaaatt--gtg 97  Q
    |||||||||||||||||||||||||||||| || || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||  |||    
T  242736 aagatgaagattgttggtgatttttaattttagaaaattcaagacaaatagggaaagattataaatgatcatatgttgtgagtccattgtaaattttgtg 242637  T
Q  98 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  242636 tgcttttcaaatcaaacccttgatcaccaattctaagtgacacatggcaagacttaacagttttagcaaaaaa 242564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 6709961 - 6709789
Alignment:
Q  1 aagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctattgtaaatt--gtg 97  Q
    |||||||||||||||||||||||||||||| || || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||  |||    
T  6709961 aagatgaagattgttggtgatttttaattttagaaaattcaagacaaatagggaaagattataaatgatcatatgttgtgagtccattgtaaattttgtg 6709862  T
Q  98 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6709861 tgtttttcaaatcaaacccttgatcaccaatcctaagtgacacgtggcaagacttaacagttttagcaaaaaa 6709789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 6710649 - 6710801
Alignment:
Q  1 aagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctattgtaaatt--gtg 97  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||  |||    
T  6710649 aagatgaagattgttggtaatttttaattttaggaaattcaagacaaacacg-aaagattataaatgatcatatgttgtgagtctatcgtaaattttgtg 6710747  T
Q  98 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagact 151  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  6710748 tgctttttaaattcaacccttgatcaccaattctaagtgacatgtggcaagact 6710801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 25786164 - 25786115
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 143  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  25786164 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtg 25786115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 2971929 - 2971846
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||| ||||||||||||||||  ||| || ||| ||||||||| |||||||| ||||||||| |||||| ||| ||||||||||    
T  2971929 aaataatcatatgttgtgagttcattttatatttgtgtgctttctaaatccagcccttgatcgccaatcttaaatgacacgtgg 2971846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 25889379 - 25889466
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 148  Q
    ||||||| |||||||||||||| |||||| | ||||||  |||| ||||| | |||||||||||||||| ||| ||||| ||||||||    
T  25889379 aaatgattatatgttgtgagtccattgtatacttgtgtatttttcaaatctagcccttgatcaccaatcttaaatgacatgtggcaag 25889466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 14391236 - 14391163
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaag 134  Q
    |||||||||||||||||||| | |||||| | |||||| ||||| ||||| |||||||||||| ||||| ||||    
T  14391236 aaatgatcatatgttgtgagcccattgtatacttgtgtacttttcaaatcaaacccttgatcatcaatcttaag 14391163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 47411368 - 47411421
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 147  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||| |||||||    
T  47411368 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacatgtggcaa 47411421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 52181225 - 52181270
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgaca 139  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||    
T  52181225 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgaca 52181270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 25787089 - 25787133
Alignment:
Q  99 gctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 143  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||||    
T  25787089 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtg 25787133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 48973428 - 48973345
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||||| |||||||||||| | |||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||    
T  48973428 aaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 48973345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 16217636 - 16217586
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||||||||||||||| |||| |||||| |||||| ||| ||||||||||    
T  16217636 tgtgtgctttttaaatctaaccgttgatcgccaatcttaaatgacacgtgg 16217586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 34531893 - 34531815
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgaca 139  Q
    ||||||| |||||||||||| | |||||| ||| |||| ||||| ||||| | |||||||||||||||| ||| |||||    
T  34531893 aaatgattatatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgaca 34531815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 9769326 - 9769500
Alignment:
Q  1 aagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagtctattgtaaatt--- 94  Q
    ||||||||| |||||||| ||||||||||| | ||| ||||||| ||| || |||||||  ||||||| ||||||||||||||||| ||||||||||       
T  9769326 aagatgaagtttgttggtaatttttaattttaagaaattcaagataaataaagaaagataatataaattatcatatgttgtgagtcaattgtaaattttt 9769425  T
Q  95 gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaa 169  Q
    || || |||| ||||||||||  | |||||||||||||||||||||||||| ||  ||||| |||||||||||||    
T  9769426 gtctggttttcaaatccaacctctcatcaccaatcctaagtgacacgtggcgagtgttaacagttttagcaaaaa 9769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 9777148 - 9776976
Alignment:
Q  3 gatgaagattgttggtgatttttaa-tttaggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagtctattgtaaat---tgt 96  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||||  |||||||  ||||||| |||||||||||||| || |||||||||   |||    
T  9777148 gatgaagattgttggtgatttttaattttaggaaatttaagacaaacagagaaagataatataaattatcatatgttgtgaatccattgtaaatttgtgt 9777049  T
Q  97 gtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    |||| ||| |||||||||| ||||||| ||||||||| ||||| ||||||||  ||||| | | ||||||||||    
T  9777048 gtgc-tttcaaatccaacctttgatcaacaatcctaaatgacatgtggcaagggttaacagatgtagcaaaaaa 9776976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 33149748 - 33149602
Alignment:
Q  28 tttaggaagttcaagacaaacaaggaaagattat-aaatgatcatatgttgtgagtctattgtaaat---tgtgtgctttttaaatccaacccttgatca 123  Q
    |||||||| || |||||||| |||||||||| || |||| |||||||||||  |||| ||| || ||   |||| |||||||||||| ||||||||||||    
T  33149748 tttaggaaatttaagacaaataaggaaagataattaaattatcatatgttgctagtccattatatatgtgtgtgcgctttttaaatctaacccttgatca 33149649  T
Q  124 ccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    | |||| ||||||||||||||||||  |||||||||||| |||||||    
T  33149648 caaatcttaagtgacacgtggcaagggttaacggttttaacaaaaaa 33149602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 29822576 - 29822751
Alignment:
Q  1 aagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagtctattgtaaatt--- 94  Q
    |||||||||||| || |||||||||||||| | ||| || |||||||| ||| ||| ||  ||||||| |||||||    ||||||||||||| |||       
T  29822576 aagatgaagattatttgtgatttttaattttaagaaattaaagacaaataagtaaatataatataaattatcatatacattgagtctattgtatatttgt 29822675  T
Q  95 gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    | ||||||||||||||||||| || || | ||||| ||||||||| ||||||||| |||||||||||| |||||||    
T  29822676 gagtgctttttaaatccaaccattcataatcaatcttaagtgacatgtggcaagagttaacggttttaacaaaaaa 29822751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 29821511 - 29821434
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaac 171  Q
    ||||||||||||||||| || | ||||| | ||||| |||||||||||| |||||| |||||||||||| ||||||||    
T  29821511 tgtgtgctttttaaatctaatcattgattatcaatcttaagtgacacgtagcaagagttaacggttttaacaaaaaac 29821434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 382891 - 382967
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    ||||||||||| ||||  |||||||||||||||||| ||| ||||||||||||||  ||||||||||| | ||||||    
T  382891 tgtgtgcttttcaaatttaacccttgatcaccaatcataaatgacacgtggcaagtgttaacggtttttgtaaaaaa 382967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 29536942 - 29536859
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||||||||||||||||||||||||||| | ||| || ||||| ||||| ||||||||||||| |||| ||| ||||| ||||    
T  29536942 aaatgatcatatgttgtgagtctattgtatacttgcgtacttttcaaatctaacccttgatcacaaatcttaaatgacatgtgg 29536859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 42632897 - 42632849
Alignment:
Q  99 gctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 147  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  42632897 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtggcaa 42632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 47808027 - 47808077
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||||| ||||||||| ||| ||| ||||||||||    
T  47808027 tgtgtgctttttaaatccaaccgttgatcaccgatcttaactgacacgtgg 47808077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 51825541 - 51825591
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  51825541 tgtgtgctttttaaattcaaccattgatcaccaatcttaactgacacgtgg 51825591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 42633806 - 42633859
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 147  Q
    |||||||||||||||||||||| ||||| ||||||| ||| ||||| |||||||    
T  42633806 tgtgtgctttttaaatccaaccgttgattaccaatcttaaatgacatgtggcaa 42633859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 33150600 - 33150676
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    ||||||||||| | |||||||| ||||| ||||||| |||||||||||| | ||   |||||||||||| |||||||    
T  33150600 tgtgtgcttttcatatccaaccattgataaccaatcttaagtgacacgtagtaatggttaacggttttaacaaaaaa 33150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 41387354 - 41387406
Alignment:
Q  95 gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 147  Q
    ||||||||||||||||||||| ||||||||||||  ||| ||||| |||||||    
T  41387354 gtgtgctttttaaatccaaccgttgatcaccaattttaaatgacatgtggcaa 41387406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 52293352 - 52293492
Alignment:
Q  2 agatgaagattgttggtgatttttaatttaggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctattgta-aattgtgtgc 100  Q
    |||||||||||| |||||||||| ||||||  || || | || || ||||  |||| || ||||||| |||||||||||| |||||||| | |||||| |    
T  52293352 agatgaagattgatggtgattttaaatttat-aattttaggaaaatcaag--aagaatagaaatgattatatgttgtgagcctattgtatacttgtgtac 52293448  T
Q  101 tttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||| ||||  | |||||||||||||||| ||| ||||| ||||    
T  52293449 ttttcaaatatagcccttgatcaccaatcttaaatgacatgtgg 52293492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 12060868 - 12060785
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||| ||||| |||| ||||||| ||| | ||||||| ||||| || || ||||||||||||| ||||||||| ||||    
T  12060868 aaatgatcatctgttgcgagtttattgtatatttgcgtgctttctaaattcagccattgatcaccaatcttaagtgacatgtgg 12060785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 47854716 - 47854633
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||||| |||||| | ||| || ||||| ||||| || |||||||||| |||| ||| ||||| ||||    
T  47854716 aaatgatcatatgttgtgagtccattgtatacttgcgtacttttcaaatctaatccttgatcacaaatcttaaatgacatgtgg 47854633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 48826042 - 48825959
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||||| |||||||||||| | |||||| | |||||| ||||| ||| | |||||||||||||||||| ||| ||||| ||||    
T  48826042 aaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaacctaacccttgatcaccaatcttaaatgacatgtgg 48825959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 2124225 - 2124171
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 148  Q
    |||||||||||||||||||||| |||||||| |||| ||| ||||| ||| ||||    
T  2124225 tgtgtgctttttaaatccaaccgttgatcactaatcttaaatgacatgtgacaag 2124171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 47807009 - 47806964
Alignment:
Q  98 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 143  Q
    |||||||||||||||||| ||||||||| ||| ||| |||||||||    
T  47807009 tgctttttaaatccaaccattgatcaccgatcttaactgacacgtg 47806964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 39287679 - 39287611
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatc 129  Q
    ||||||| |||||||||||| | |||||| ||| |||| ||||| ||||| | ||||||||||||||||    
T  39287679 aaatgattatatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatc 39287611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 11431385 - 11431461
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  11431385 tgtgcgctttttaaatccaaccattaatcaccaatcctaagtgacatgtggcaagacttaacagttttaacaaaaaa 11431461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 1663384 - 1663334
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||||| ||||||||| ||| ||| | ||||||||    
T  1663384 tgtgtgctttttaaatccaaccgttgatcaccgatcttaactaacacgtgg 1663334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 4567180 - 4567120
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgat 121  Q
    ||||||| |||||||||||||| |||||| | || ||| ||||||||||| ||||||||||    
T  4567180 aaatgattatatgttgtgagtccattgtatacttatgtactttttaaatctaacccttgat 4567120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 3171047 - 3171106
Alignment:
Q  168 aaacattccccatgaacgcacccaccactaaattatacaagcaatactaaacaaagaatt 227  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3171047 aaacattccccgtgaacgcacccaccactaaattatacaagtaatactaaacaaagaatt 3171106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 27750541 - 27750590
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 143  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  27750541 tgtgtgctttttaaatccaaccgttgatcaccaatcttaactgacacgtg 27750590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 3237613 - 3237563
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||||||||||    
T  3237613 tgtgtgctttttaaatccaactgttgatcaccaatcttaactgacacgtgg 3237563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 38590016 - 38589967
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 143  Q
    |||||||||||||||| ||||| ||||||||||||| ||| |||||||||    
T  38590016 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtg 38589967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 8096451 - 8096529
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgaca 139  Q
    |||||||||| ||||| |||| ||||||| ||| | ||||||| |||||||| || ||||||||||||| ||| |||||    
T  8096451 aaatgatcatgtgttgcgagtttattgtatatttgcgtgctttctaaatccagccattgatcaccaatcttaaatgaca 8096529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 31624102 - 31624052
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||| | ||||||||| ||||||| ||||| ||||||||||||||    
T  31624102 tgtgtgctttattaatccaaccgttgatcatcaatcttaagtgacacgtgg 31624052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 9754148 - 9754316
Alignment:
Q  8 agattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagtctattgtaaatt---gtgtgct 101  Q
    ||||| ||||||||||||||||| ||||| ||| ||||||| ||  ||||||  ||||||| |||||||  ||||| ||||||||| | |   ||| |||    
T  9754148 agattattggtgatttttaattttaggaaattcgagacaaataaaaaaagataatataaattatcatatactgtgaatctattgtatactcgtgtgagct 9754247  T
Q  102 ttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    ||  |||| ||||||||||||||||||||||||||||| |||||||   ||||| ||||||||||||||    
T  9754248 ttacaaattcaacccttgatcaccaatcctaagtgacatgtggcaaaggttaacagttttagcaaaaaa 9754316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 28928551 - 28928475
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    ||||||||||||| |||||||||||||| | ||||| ||||||| | |||||||||||||||||||||| |||||||    
T  28928551 tgtgtgctttttagatccaacccttgattatcaatcttaagtgatatgtggcaagacttaacggttttaacaaaaaa 28928475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 28930937 - 28931109
Alignment:
Q  4 atgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagtctattgtaaatt---gtg 97  Q
    ||||||||| || |||||||||||||| | ||| || |||||||| || |||| ||  ||||||| |||||||  ||| |||  |||||| |||   | |    
T  28930937 atgaagattttttgtgatttttaattttaagaaattaaagacaaataatgaaatataatataaattatcatatactgtaagttcattgtatatttgtgag 28931036  T
Q  98 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||  |||||||| |||||||    
T  28931037 tgctttttaaatccaacccttgatcatcaatcttaagtgacatgtggcaagagttggcggttttaacaaaaaa 28931109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 4030343 - 4030266
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaac 171  Q
    ||||||||||||||||||| || ||||| | ||||  ||||||||||||||||||| ||||| |||||| ||||||||    
T  4030343 tgtgtgctttttaaatccatccattgattatcaattttaagtgacacgtggcaagagttaacagttttaacaaaaaac 4030266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 4030786 - 4030859
Alignment:
Q  97 gtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    ||||||||||||||||||| || || | ||||| ||||||||| |||| |||| |||||||||||| |||||||    
T  4030786 gtgctttttaaatccaaccattcataatcaatcttaagtgacatgtggtaagagttaacggttttaacaaaaaa 4030859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 24546891 - 24547062
Alignment:
Q  5 tgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattata--aatgatcatatgttgtgagtctattgtaaatt---gtgt 98  Q
    |||||||| || |||||||||||||| | ||| || |||| ||| ||||||| || |||  ||| ||||||| |  |||||| |||||| |||   | ||    
T  24546891 tgaagattatttgtgatttttaattttaagaaattaaagaaaaataaggaaatataatagaaattatcatatatattgagtccattgtatatttgtgagt 24546990  T
Q  99 gctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    |||| |||||||||||| ||||| | ||||| ||||||||| ||||||| | |||||||||||  |||||||    
T  24546991 gcttattaaatccaaccattgattatcaatcttaagtgacatgtggcaacagttaacggttttgacaaaaaa 24547062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 16269536 - 16269587
Alignment:
Q  93 ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||| ||||| ||||||||||||||||||||||||| ||| | ||||||||    
T  16269536 ttgtgcgctttctaaatccaacccttgatcaccaatcttaaattacacgtgg 16269587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 17359023 - 17358980
Alignment:
Q  67 atcatatgttgtgagtctattgta-aattgtgtgctttttaaat 109  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  17359023 atcatatgttgtgagtcaattgtataattgtgtgctttttaaat 17358980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 15269012 - 15269088
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    ||||||||||| ||||| |||||||||||||||||| ||| ||||| ||||||||| ||||||||||| | ||||||    
T  15269012 tgtgtgcttttcaaatctaacccttgatcaccaatcataaatgacatgtggcaagagttaacggtttttgtaaaaaa 15269088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 18342965 - 18342863
Alignment:
Q  67 atcatatgttgtgagtctattgtaaattgtgtgc---tttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttag 163  Q
    ||||||||||| ||||| ||| |||||||||||    ||||||||||||||| || |||| |||||| ||||||||| |||||||  ||||| |||||||    
T  18342965 atcatatgttgagagtccattctaaattgtgtgtgcttttttaaatccaacctttaatcatcaatcccaagtgacacatggcaagggttaacagttttag 18342866  T
Q  164 caa 166  Q
    |||    
T  18342865 caa 18342863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 41312730 - 41312647
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaat-tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||||| |||||||||||||| |||||| |  ||||| ||||| ||||| |||||||||||||||||| ||| ||||| ||||    
T  41312730 aaatgattatatgttgtgagtccattgtatacctgtgtacttttcaaatctaacccttgatcaccaatcttaaatgacatgtgg 41312647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 18343824 - 18343886
Alignment:
Q  108 atccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    |||||||||||||||||||||  |||||||||| | ||||   ||||||||||||||||||||    
T  18343824 atccaacccttgatcaccaattttaagtgacacatagcaaaggttaacggttttagcaaaaaa 18343886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 3665454 - 3665371
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||||| |||||||||||| |||||||| | |||||| ||||| ||||| |  ||||||||||||||| ||| ||||| ||||    
T  3665454 aaatgattatatgttgtgagcctattgtatacttgtgtacttttcaaatctagtccttgatcaccaatcttaaatgacatgtgg 3665371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 6208984 - 6209035
Alignment:
Q  93 ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||| ||||||||||| |||||||||||||||||| ||| ||||| ||||    
T  6208984 ttgtgtactttttaaatctaacccttgatcaccaatcttaaatgacatgtgg 6209035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 14510415 - 14510494
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacac 140  Q
    |||||||||||||||||||||  |||||| | ||||||||||| ||||||||  | ||||||| ||||| ||| ||||||    
T  14510415 aaatgatcatatgttgtgagtgcattgtatatttgtgtgctttctaaatccagtcattgatcatcaatcttaaatgacac 14510494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 33836999 - 33836916
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||||| |||||||||||| | |||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||    
T  33836999 aaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 33836916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 42246820 - 42246737
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaat-tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||| ||||||||||||||||   ||||| || |||| ||||| ||||||||||||||||||| | ||| ||||||| ||||||    
T  42246820 aaataatcatatgttgtgagttcgttgtatatatgtgcgctttctaaatccaacccttgatcatccatcttaagtgatacgtgg 42246737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 30223863 - 30223950
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 148  Q
    ||||||| |||||||||||||| |||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||||||    
T  30223863 aaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtggcaag 30223950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 22061715 - 22061769
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 148  Q
    |||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||    
T  22061715 tgtgtgctttttaaatccaaccgttgatccccaatcttaaatgacacgtggcaag 22061769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 35128112 - 35128162
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  35128112 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgg 35128162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 30222875 - 30222788
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 148  Q
    ||||||| |||||||||||||| |||||| | |||||| ||||| ||||| |  ||||||||||||||| ||| ||||| ||||||||    
T  30222875 aaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagtccttgatcaccaatcttaaatgacatgtggcaag 30222788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 41126469 - 41126386
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    ||||||| |||||||||||| |||||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||    
T  41126469 aaatgattatatgttgtgagcctattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 41126386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 22060659 - 22060609
Alignment:
Q  94 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||| |||||    
T  22060659 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgactcgtgg 22060609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 48754185 - 48754116
Alignment:
Q  101 tttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 170  Q
    |||||||||||| || ||||||||||||| |||| ||||||||| | || ||||||| ||| ||||||||    
T  48754185 tttttaaatccagccgttgatcaccaatcttaagggacacgtggaaggagttaacggattttgcaaaaaa 48754116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 41618385 - 41618453
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatc 129  Q
    ||||||| |||||||||||| | |||||| | |||||| ||||| ||||| ||||||||||||||||||    
T  41618385 aaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctaacccttgatcaccaatc 41618453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 33458534 - 33458456
Alignment:
Q  67 atcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||||| |||| |||||| ||| ||| ||||  |||||||| ||||||||||| |||| ||| ||||||||||    
T  33458534 atcatatgttgtaagtccattgtatatttgtgcgcttactaaatccagcccttgatcactaatcttaaatgacacgtgg 33458456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 36673719 - 36673805
Alignment:
Q  59 tataaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||||||||| |||||||||||| | |||||| | |||||| ||||| ||| | | |||||||||||||||| ||| ||||| ||||    
T  36673719 tataaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaacctagcccttgatcaccaatcttaaatgacatgtgg 36673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 2151 - 2234
Alignment:
Q  62 aaatgatcatatgttgtgagtctattgtaaat-tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 144  Q
    |||| |||||||||| |||||  |||||| || |||| ||| | ||||||||||||||||||| | ||| ||||||||||||||    
T  2151 aaataatcatatgttttgagttcattgtatatatgtgcgctctctaaatccaacccttgatcatccatcttaagtgacacgtgg 2234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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