View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5803_low_34 (Length: 211)

Name: NF5803_low_34
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5803_low_34
NF5803_low_34
[»] chr3 (2 HSPs)
chr3 (15-193)||(40147090-40147268)
chr3 (10-174)||(8102696-8102860)
[»] chr4 (6 HSPs)
chr4 (48-166)||(7606479-7606597)
chr4 (49-169)||(7628861-7628981)
chr4 (15-169)||(7637307-7637461)
chr4 (48-169)||(7615490-7615611)
chr4 (48-98)||(8999254-8999304)
chr4 (114-166)||(7655961-7656013)
[»] chr6 (2 HSPs)
chr6 (51-173)||(11969168-11969290)
chr6 (15-189)||(6500706-6500881)
[»] chr7 (3 HSPs)
chr7 (48-169)||(8935859-8935980)
chr7 (127-166)||(8938714-8938753)
chr7 (71-169)||(8910943-8911041)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 40147090 - 40147268
Alignment:
Q  15 aaaatatcatccctccaatcactttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147090 aaaatatcatccctccaatcactttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcga 40147189  T
Q  115 taggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaat 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147190 taggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaat 40147268  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 8102860 - 8102696
Alignment:
Q  10 cgaagaaaatatcatccctccaatcactttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggt 109  Q
    |||| |||||||| ||||| ||| |||||||| |||| |||||| |||| |||||||||||| | ||||| |||||||| ||  | |  |||| ||||||    
T  8102860 cgaacaaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagacccacaagagaacgcatattttatggt 8102761  T
Q  110 cgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttg 174  Q
    || |||||||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||    
T  8102760 cgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttg 8102696  T

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Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 7606597 - 7606479
Alignment:
Q  48 ctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgc 147  Q
    |||||| |||||||  ||||||||||||||||||||| ||| |||||||| ||| || | |||| |||||||| | || ||||||||||||||||||| |    
T  7606597 ctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattac 7606498  T
Q  148 ctgaagattattttggaaa 166  Q
    | |||||||||||||||||    
T  7606497 cagaagattattttggaaa 7606479  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 7628981 - 7628861
Alignment:
Q  49 tttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgcc 148  Q
    ||||| ||| ||||| ||||| |||||||||||||||||| |||||||| | | |||  ||||||||||||| |||| ||||| || |||||||||| ||    
T  7628981 tttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgcgataggagttagaccaaggcttattccaccattacc 7628882  T
Q  149 tgaagattattttggaaatgc 169  Q
     ||||||||||||||||||||    
T  7628881 agaagattattttggaaatgc 7628861  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 7637461 - 7637307
Alignment:
Q  15 aaaatatcatccctccaatcactttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcga 114  Q
    |||||||| || || ||| ||||||| || ||  ||||| ||| ||||| ||||| |||||||||||||||||| |||||||| | | |||  |||| ||    
T  7637461 aaaatatcttctctacaagcacttttaactcacgtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtga 7637362  T
Q  115 taggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgc 169  Q
    |||||| | || ||||||| |||||||| || || ||||||||||||||||||||    
T  7637361 taggagttcgaccaaggttagttccaccgttaccagaagattattttggaaatgc 7637307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 7615611 - 7615490
Alignment:
Q  48 ctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgc 147  Q
    |||||| |||||||||| ||||||| | ||||||||||||| |||||||| | | |||| || | |||||||| | || ||||||| ||||||||||| |    
T  7615611 ctttggtgctctgtgatgcgttccataaaatttgacccacaagaagaagtatttaatatagttgtgataggagttcgaccaaggttagttccaccattac 7615512  T
Q  148 ctgaagattattttggaaatgc 169  Q
    | ||| ||||||||||||||||    
T  7615511 cagaatattattttggaaatgc 7615490  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 8999304 - 8999254
Alignment:
Q  48 ctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtt 98  Q
    ||||||||||||||||||||||| |||||| |||||| ||| |||||||||    
T  8999304 ctttggcgctctgtgatccgttcaaaacaacttgacctacaagaagaagtt 8999254  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 7655961 - 7656013
Alignment:
Q  114 ataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaa 166  Q
    ||||||| |||| ||||  |||||||||||||||| |||||||||||||||||    
T  7655961 ataggagttagaccaagacttgttccaccattgccggaagattattttggaaa 7656013  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 11969290 - 11969168
Alignment:
Q  51 tggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgcctg 150  Q
    |||||||||||| |||| || || |||||||||||||| ||||||||| |||||||||| |  |  || | |||||| || |||||| ||||||| || |    
T  11969290 tggcgctctgtggtccgctcaaatcaatttgacccacaagaagaagttcattatatggtagtaactggtgttagatcgagatttgtttcaccattaccgg 11969191  T
Q  151 aagattattttggaaatgctgtt 173  Q
    | |||||||||||||||||||||    
T  11969190 aggattattttggaaatgctgtt 11969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 6500881 - 6500706
Alignment:
Q  15 aaaatatcatccctccaatcactttttacacatctttggcgctctgtgatccgttccaaacaatttgacccac-acgaagaagtttattatatggtcgcg 113  Q
    |||||||||||| | ||| | ||||| || ||  ||||||| |||||||||| ||||||| || ||||||||| | |||||||||||  ||||| ||       
T  6500881 aaaatatcatccttacaagctcttttaactcacatttggcgttctgtgatccattccaaaaaacttgacccaccaagaagaagtttacaatatgttccta 6500782  T
Q  114 ataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggtta 189  Q
    ||||| | |||| ||||| ||||||||| ||| ||  ||||||||||||||||||||||   || |||||||||||    
T  6500781 ataggcgttagaccaaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggtta 6500706  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 8935859 - 8935980
Alignment:
Q  48 ctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgc 147  Q
    |||||| ||| ||||||  |||||||| || |||||||||| ||||||||   | |||   ||| |||||||| | || ||||||| ||||||||||| |    
T  8935859 ctttggtgctgtgtgatgtgttccaaaaaaattgacccacaagaagaagtggttaatagaatcgtgataggagttggaccaaggttagttccaccattac 8935958  T
Q  148 ctgaagattattttggaaatgc 169  Q
    | ||| ||||||||||||||||    
T  8935959 cagaatattattttggaaatgc 8935980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 8938714 - 8938753
Alignment:
Q  127 caaggtttgttccaccattgcctgaagattattttggaaa 166  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  8938714 caaggtttgttccaccattaccagaagattattttggaaa 8938753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 8910943 - 8911041
Alignment:
Q  71 caaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgc 169  Q
    |||||||||||| ||||| || ||||| | | |||  |||  |||||||| | || ||||||| ||||||||||| || ||| ||||||||||||||||    
T  8910943 caaacaatttgatccacaagatgaagtatttaatagagtcatgataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgc 8911041  T

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