View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_4 (Length: 592)
Name: NF5803_low_4
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 13 - 574
Target Start/End: Complemental strand, 43142315 - 43141754
Alignment:
| Q |
13 |
gcacagaccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgac |
112 |
Q |
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| T |
43142315 |
gcacagaccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgac |
43142216 |
T |
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| Q |
113 |
aaaggaaagaaaggctattgccattcttcatagcatccttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcat |
212 |
Q |
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| T |
43142215 |
aaaggaaagaaaggctattgccattcttcatagcatctttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcat |
43142116 |
T |
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| Q |
213 |
gacaacggaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaat-agaagcaaaagcatacccaagagcaagtgttaagcaaat |
311 |
Q |
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| T |
43142115 |
gacaacggaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaataagaagcaagagcatacccaagagcaagtgttaagcaaat |
43142016 |
T |
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| Q |
312 |
aaaatatccctgcagagcaaacaaaatattcagatttatgattatgtatcatggatatttctctaaaaacaacaaaagccaaggaatacaaagcaatatt |
411 |
Q |
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| T |
43142015 |
aaaatatccctgcagagcaaacaaaatattcagatttatgattatgtatcat-gatatttctctaaaaacaacaaaagccaaggaatacaaagcaatatt |
43141917 |
T |
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| Q |
412 |
taaggaaacacaatgtagatttccctattcctacaatgtttcttgtgttgcaagtatatcatgatatctcaatgcaagaattatggatgtcaaatctgtg |
511 |
Q |
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| T |
43141916 |
taaggaaacacaatgtagatttccctattcctacaatgtttcttgtgttgcaagtatatcatgatatctcaatgcaagaattatggatgtcaaatctgtg |
43141817 |
T |
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| Q |
512 |
cacgtgacagatgggaagcaaagcaagccaagctgatacatcaactataaaatggggagttaa |
574 |
Q |
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| T |
43141816 |
cacgtgacagatgggaagcaaagcaagccaagctgatacatcaactataaaatggggagttaa |
43141754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 49 - 375
Target Start/End: Complemental strand, 43153875 - 43153551
Alignment:
| Q |
49 |
atgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaaggaaagaaaggctattgccattcttcatagcat |
148 |
Q |
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| T |
43153875 |
atgactactgttactcttggaagattggcctgatagaagtgctcaagctcatttatgtcatgacataggaaagaaagactattgccattctgcatagctt |
43153776 |
T |
|
| Q |
149 |
ccttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcatgacaacggaagcgtttccagattctatgac-attca |
247 |
Q |
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| T |
43153775 |
ccttcatttgttttatctctctgttcctgtaa-gggaaaaattcagtatttctcatagggg--tgacaatgaaagtgtttctggattctgacactattga |
43153679 |
T |
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| Q |
248 |
ttattaagtaatgagtacctaaaat-agaagcaaaagcatacccaagagcaagtgttaagcaaataaaatatccctgcagagcaaacaaaatattcagat |
346 |
Q |
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| T |
43153678 |
gtaatgactaatgagtacctaacataagaagcaagagcccacccaagagcaagtgttaagcaaatgaaacatccctgcaaagtaaacataacattcagat |
43153579 |
T |
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| Q |
347 |
ttatgattatgtatcatggatatttctct |
375 |
Q |
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| T |
43153578 |
ttattattatttaccat-gatatttctct |
43153551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 550
Target Start/End: Complemental strand, 43153267 - 43153207
Alignment:
| Q |
491 |
attatggatgtcaaatctgtgcacgtgacagatgggaagcaaagcaa-gccaagctgatac |
550 |
Q |
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| T |
43153267 |
attatggatgtcaaatctgtgaacatgacagatgggaagcaaagcaaccccaagctgatac |
43153207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 43153348 - 43153311
Alignment:
| Q |
433 |
tccctattcctacaatgtttcttgtgttgcaagtatat |
470 |
Q |
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| T |
43153348 |
tccctatccctacagtgtttcttgtgttgcaagtatat |
43153311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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