View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5803_low_5 (Length: 554)
Name: NF5803_low_5
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Original strand, 18645050 - 18645587
Alignment:
| Q |
1 |
tatcatcgcacaatagcaattagataaagttatgttgtgcgacagcgctacagtgcctctattgccgctacttgacaactattgagtattgatcctaaat |
100 |
Q |
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| T |
18645050 |
tatcatcgcacaatagcaattagataaagttatgttgtgcgacagcgctacagtgcctctattgccgctacttgacaactattgagtattgatcctaaat |
18645149 |
T |
|
| Q |
101 |
aatatctgacatgaatatgaatgatgaaaaacctgttgatgttgataacaaaaagtgtaggttgtctctttgcagcatatgtttctccccaatcctcctc |
200 |
Q |
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| T |
18645150 |
aatatctgacatgaatatgaatgatgaaaaacctgttgatgttgataacaaaaagtgtaggttgtctctttgcagcatatgtttctccccaatcctcctc |
18645249 |
T |
|
| Q |
201 |
ccactctccttgacctttccagataccaaaatcattctctgcacaaccacctttcttgtagcccgtattattaaatactggctttgtaggagagggtgct |
300 |
Q |
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| T |
18645250 |
ccactctccttgacctttccagataccaaaatcattctctgcacaaccacctttcttgtagcccgtattattaaatactggctttgtaggagagggtgct |
18645349 |
T |
|
| Q |
301 |
tctgctacatatgctatcaatgtttcatccaagttccaagagacaccttcaaacctaaaccaaggtaaaataaacaaacaaatctttattgtgcannnnn |
400 |
Q |
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| T |
18645350 |
tctgctacatatgctatcaatgtttcatccaagttccaagagacaccttcaaacctaaaccaaggtaaaataaacaaacaaatctttattgtgcattttt |
18645449 |
T |
|
| Q |
401 |
nnagtagaactttgttatgcgagtgttaaaaccatggttacaaccgattaagccaaaaggctttggttccattgcaactctttaacattgaattcaacat |
500 |
Q |
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| T |
18645450 |
ttagtagaactttgttatgcgagtgttaaaaccatggttacaaccgattaagccaaaaggctttggttccattgcaactctttaacattgaattcaacat |
18645549 |
T |
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| Q |
501 |
tgcaaactcacatacatgaataattaataataataaat |
538 |
Q |
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| T |
18645550 |
tgcaaactcacatacatgaataattaataataataaat |
18645587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 18635755 - 18635838
Alignment:
| Q |
139 |
atgttgataacaaaaagtgtaggttgtctctttgcagcatatgtttctccccaatcctcctcccactctccttgacctttccag |
222 |
Q |
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||||| || |||||||||| ||| ||||| ||| | ||||||||||||||||| || |||||||| |||||||||||||||||| |
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| T |
18635755 |
atgtttatgacaaaaagtgcaggctgtctttttcccgcatatgtttctccccagtcttcctcccaatctccttgacctttccag |
18635838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 15086782 - 15086699
Alignment:
| Q |
139 |
atgttgataacaaaaagtgtaggttgtctctttgcagcatatgtttctccccaatcctcctcccactctccttgacctttccag |
222 |
Q |
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||||| || |||||||||| ||| ||||| ||| | ||||||||||||||||| || |||||||| |||||||||||||||||| |
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| T |
15086782 |
atgtttatgacaaaaagtgcaggctgtctttttcccgcatatgtttctccccagtcttcctcccaatctccttgacctttccag |
15086699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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