View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5803_low_8 (Length: 432)
Name: NF5803_low_8
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5803_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 9579356 - 9579733
Alignment:
| Q |
1 |
atttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaatccatacataaactttgacgaatttattctca |
100 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
9579356 |
atttagcaaaaacaaacatccactgatacccctaagcatgctagcgggttcgaccaccactggttcaatccatacataaactttgacgactttaatctca |
9579455 |
T |
|
| Q |
101 |
accaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgccttccaaatgctcc |
200 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
9579456 |
accaactcgatgataaaagattgacactatcgacaatcgattcagtatcc--aatccttataatgaaaaatcctttcatttctcgccttccaaatgctcc |
9579553 |
T |
|
| Q |
201 |
acatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccctgtaaaggtaataaagttgatggtacacatattgtg |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9579554 |
acatactcgtgaaccaaatggcttcaagttcctgaactgcatctttcgtca--cgaaccagccctgtaaaggtaataaagttgatggtacac--attgtg |
9579649 |
T |
|
| Q |
301 |
aaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgggcaagcaaaacataagctgtta |
387 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9579650 |
aaac---accacttgtactcccagccaatgcgcaattccgaaccatacttttttgatacagttgggcaagcaaaacataagctgtta |
9579733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 32718915 - 32718512
Alignment:
| Q |
1 |
atttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaatccatacataaactttgacgaatttattctca |
100 |
Q |
| |
|
||||||| | ||||||||||||| ||||| |||||||| |||| |||||| |||| |||| ||||| ||||| ||||||||||||| | || |||| |
|
|
| T |
32718915 |
atttagcgagaacaaacatcccctgatacctctaagcatgctagagggttcaaccagcact--ttcaaatcatacttaaactttgacgactctaatctct |
32718818 |
T |
|
| Q |
101 |
accaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgccttccaaatgctcc |
200 |
Q |
| |
|
|||||| | |||||||||||||||||||| | |||| ||||| ||| ||| ||||||||||||||||||| | | |||||||||||| ||||| ||| |
|
|
| T |
32718817 |
gccaactccacgataaaagcttgacactgtccataatcgattcatcatctcaa-tccttatgatgaaaaatccttgcatttctcgccttcgaaatgttcc |
32718719 |
T |
|
| Q |
201 |
acatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccctgtaaaggtaataaagttgatggtacacatattgtg |
300 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| |||||||| || | | |||||||||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
32718718 |
acatactcgcgaaccagatggcttccagtccctgaactgcatcttttgttatgggaaccagccctgtaaatgtaataaagtggatggtactcatattgtg |
32718619 |
T |
|
| Q |
301 |
aaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgggcaagcaaaacataagctgttagaagtctctatct |
400 |
Q |
| |
|
|||| ||||||||||| || ||||| |||||||||| |||||| || |||||| |||||||||||||||||| ||||| ||| |||| ||||||| |
|
|
| T |
32718618 |
aaac---accacctgtacaccaagccattgcgcaattctgaaccagac--ttttgagacagtcgggcaagcaaaaaataagtggttggaag--tctatct |
32718526 |
T |
|
| Q |
401 |
ctccacatcctcct |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32718525 |
ctccacatcctcct |
32718512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9584891 - 9585116
Alignment:
| Q |
1 |
atttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaat---ccatacataaactttgacgaatttattc |
97 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || |
|
|
| T |
9584891 |
atttagcaaaaacaaacatcccccgatacccctaagcatgctagcgggttcgaccaccactggttcaatattccatacataaactttgacgactttaatc |
9584990 |
T |
|
| Q |
98 |
tcaaccaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgccttccaaatgc |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||| || | | |||||||||||| |||||| |
|
|
| T |
9584991 |
tcaaccaactcaatgataaaagcttgacactatggacaagcaattcagtatcc--aatccttatgatgaaaaacccttgcatttctcgccttcaaaatgc |
9585088 |
T |
|
| Q |
198 |
tccacatactcgcgaaccaaatggcttc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9585089 |
tccacatactcgcgaaccaaatggcttc |
9585116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 411
Target Start/End: Original strand, 9585159 - 9585282
Alignment:
| Q |
283 |
gatggtacacatattgtgaaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgggcaagcaaaacataagc |
382 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |||||| ||||| |
|
|
| T |
9585159 |
gatggtacacataatgtgaaa---taccatctgtactcccagccaatgcacaattccgaaccatacttttct--tacagtcgggcatgcaaaaaataagt |
9585253 |
T |
|
| Q |
383 |
tgttagaagtctctatctctccacatcct |
411 |
Q |
| |
|
| ||||||| | | |||||| ||||||| |
|
|
| T |
9585254 |
ggctagaagtatgtgtctctctacatcct |
9585282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University