View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5804_high_2 (Length: 333)

Name: NF5804_high_2
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5804_high_2
NF5804_high_2
[»] chr3 (16 HSPs)
chr3 (20-322)||(32408797-32409100)
chr3 (213-319)||(5327477-5327582)
chr3 (238-319)||(4219228-4219308)
chr3 (213-315)||(37451761-37451863)
chr3 (198-292)||(36624722-36624814)
chr3 (198-292)||(49628115-49628207)
chr3 (238-291)||(106064-106116)
chr3 (239-292)||(34103745-34103796)
chr3 (239-300)||(34960878-34960937)
chr3 (239-292)||(40013300-40013351)
chr3 (239-292)||(48652468-48652519)
chr3 (239-292)||(54239046-54239097)
chr3 (239-299)||(3312493-3312551)
chr3 (239-299)||(22485015-22485073)
chr3 (228-284)||(33937416-33937471)
chr3 (266-298)||(42398552-42398584)
[»] chr1 (14 HSPs)
chr1 (198-319)||(18889084-18889204)
chr1 (199-319)||(38783077-38783196)
chr1 (224-319)||(32301373-32301467)
chr1 (265-319)||(31427113-31427167)
chr1 (238-292)||(28399341-28399394)
chr1 (198-292)||(42490902-42490994)
chr1 (239-292)||(424311-424362)
chr1 (239-292)||(4882379-4882430)
chr1 (239-292)||(12871671-12871722)
chr1 (198-295)||(20411582-20411677)
chr1 (239-292)||(27534749-27534800)
chr1 (239-292)||(29726616-29726667)
chr1 (266-298)||(29999924-29999956)
chr1 (266-298)||(40948376-40948408)
[»] chr8 (9 HSPs)
chr8 (214-319)||(42260959-42261063)
chr8 (198-292)||(31202467-31202559)
chr8 (238-319)||(2968580-2968661)
chr8 (239-292)||(7579883-7579934)
chr8 (239-292)||(9501640-9501691)
chr8 (197-258)||(9628918-9628978)
chr8 (239-292)||(30026908-30026959)
chr8 (239-292)||(39067717-39067768)
chr8 (239-291)||(41361782-41361832)
[»] chr2 (12 HSPs)
chr2 (214-319)||(17792498-17792602)
chr2 (215-313)||(20607311-20607408)
chr2 (212-319)||(11581121-11581227)
chr2 (211-319)||(13548892-13548999)
chr2 (199-295)||(28231114-28231208)
chr2 (199-325)||(15261399-15261524)
chr2 (239-292)||(10287026-10287077)
chr2 (239-292)||(38535325-38535376)
chr2 (239-291)||(12704737-12704787)
chr2 (239-299)||(13740673-13740731)
chr2 (266-298)||(19042568-19042600)
chr2 (266-298)||(39837275-39837307)
[»] chr5 (8 HSPs)
chr5 (211-319)||(374304-374411)
chr5 (199-319)||(14534903-14535027)
chr5 (212-319)||(17523515-17523621)
chr5 (239-292)||(12891726-12891777)
chr5 (239-292)||(17331378-17331429)
chr5 (239-292)||(28040679-28040730)
chr5 (239-292)||(33164488-33164539)
chr5 (239-292)||(39179848-39179899)
[»] chr4 (11 HSPs)
chr4 (197-319)||(51958357-51958480)
chr4 (198-291)||(26742484-26742575)
chr4 (209-319)||(46829427-46829536)
chr4 (238-292)||(6882005-6882057)
chr4 (238-292)||(12717137-12717190)
chr4 (239-292)||(6911730-6911781)
chr4 (239-292)||(29268797-29268848)
chr4 (239-292)||(30202088-30202139)
chr4 (198-291)||(43244402-43244493)
chr4 (239-299)||(26674422-26674480)
chr4 (239-299)||(39837645-39837703)
[»] chr7 (16 HSPs)
chr7 (195-319)||(14810609-14810732)
chr7 (195-319)||(15257604-15257727)
chr7 (211-291)||(43256570-43256649)
chr7 (209-291)||(27705090-27705171)
chr7 (239-299)||(15674625-15674683)
chr7 (271-319)||(37714558-37714606)
chr7 (260-319)||(10623869-10623928)
chr7 (212-319)||(39990167-39990272)
chr7 (249-295)||(26161039-26161084)
chr7 (198-292)||(39532995-39533087)
chr7 (218-319)||(6646583-6646682)
chr7 (239-292)||(10094491-10094542)
chr7 (239-292)||(42603789-42603840)
chr7 (239-292)||(43847120-43847171)
chr7 (239-291)||(28664933-28664983)
chr7 (239-295)||(45457573-45457627)
[»] chr6 (6 HSPs)
chr6 (197-292)||(9044100-9044193)
chr6 (239-292)||(2304830-2304881)
chr6 (239-292)||(12481390-12481441)
chr6 (213-257)||(12201705-12201749)
chr6 (266-298)||(16277263-16277295)
chr6 (266-298)||(28317529-28317561)
[»] scaffold0238 (1 HSPs)
scaffold0238 (199-319)||(15672-15789)
[»] scaffold1379 (1 HSPs)
scaffold1379 (239-292)||(1106-1157)
[»] scaffold0321 (1 HSPs)
scaffold0321 (239-292)||(7144-7195)
[»] scaffold0312 (1 HSPs)
scaffold0312 (239-292)||(6187-6238)
[»] scaffold0155 (1 HSPs)
scaffold0155 (239-299)||(35132-35192)
[»] scaffold0056 (1 HSPs)
scaffold0056 (198-291)||(74173-74264)
[»] scaffold0038 (1 HSPs)
scaffold0038 (266-298)||(108635-108667)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 32409100 - 32408797
Alignment:
Q  20 atgtcctacatacatataccctgctcctaccttgtctcttgtcttccccattaaagcatatgtataatttgctctgaaatctcctgaagtattttctttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32409100 atgtcctacatacatataccctgctcctaccttgtctcttgtcttccccattaaagcatatgtataatttgctctgaaatctcctgaagtattttctttt 32409001  T
Q  120 gtaagcaacnnnnnnnnnnnnnnnnnn-gaataagagaggtactataacgcaccctaatcgtcacctatttccttctccaaaatcatccatctgaattgt 218  Q
    |||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32409000 gtaagcaacaaaaaaaagattaaaagaagaataagagaggtactataacgcaccctaatcgtcacctatttccttctccaaaatcatccatctgaattgt 32408901  T
Q  219 ttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgtttattt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  32408900 ttttctttctcttttagaaaaataagtgactttcacatatctttcggttttcttttgtttgttttggtgatttcatcgtctagcacgactttgtttattt 32408801  T
Q  319 tcat 322  Q
    ||||    
T  32408800 tcat 32408797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 5327582 - 5327477
Alignment:
Q  213 aattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgt 312  Q
    |||||||||||||||||||| ||  |||||||||| | ||||| || |||| ||||||||||||||||||| |||||||| |  ||||||||||||||||    
T  5327582 aattgtttttctttctctttcagttaaataagtgattatcacaaat-tttcagttttctttcgtttgtttttgtgatttcgttgtctagcacaactttgt 5327484  T
Q  313 ttatttt 319  Q
    |||||||    
T  5327483 ttatttt 5327477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 4219228 - 4219308
Alignment:
Q  238 aaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgtttatttt 319  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||  ||||||| || |||| ||| | ||||||||||||    
T  4219228 aaataagtgattttcacatat-tttcagttttctttcgtttgtttttatgatttcgtcgtctaacacgattttgtttatttt 4219308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 37451761 - 37451863
Alignment:
Q  213 aattgtttttctttctcttttagaaaaataagtga-ctttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttg 311  Q
    ||||||||||||||||||||| |  || |||||||  |||||||||| ||| | |||||||||||| ||||| |||||||| || |||| ||  ||||||    
T  37451761 aattgtttttctttctcttttggtcaattaagtgatttttcacatatttttagcttttctttcgttggtttt-gtgatttcgtcgtctaacatgactttg 37451859  T
Q  312 ttta 315  Q
    ||||    
T  37451860 ttta 37451863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 36624814 - 36624722
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||| ||||| |||||||||||| |||| |  ||   |||||||||| |||||||||| |||| ||||||||| ||||||||| ||||||||    
T  36624814 aaaatcacccatccgaattgtttttccttctatcctaactaaataagtga-tttcacatat-tttctgttttcttttgtttgtttttgtgatttc 36624722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 49628207 - 49628115
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||| || ||||||||||||||| |||| |  |||   ||||||||| |||||||||| ||| | |||||||||||||||||| ||||||||    
T  49628207 aaaatcacccctctgaattgtttttccttctatcctagttgaataagtga-tttcacatattttttg-ttttctttcgtttgtttttgtgatttc 49628115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 106116 - 106064
Alignment:
Q  238 aaataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    |||||||||| |||||||||| ||| | |||||||||||||||||| |||||||    
T  106116 aaataagtgattttcacatatttttag-ttttctttcgtttgtttttgtgattt 106064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 34103796 - 34103745
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  34103796 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 34103745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 34960937 - 34960878
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatcta 300  Q
    ||||||||| |||||||||| |||  ||||||||||||||||||| ||||||||||| ||||    
T  34960937 aataagtga-tttcacatat-tttatgttttctttcgtttgtttttgtgatttcatcgtcta 34960878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 40013351 - 40013300
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  40013351 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 40013300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 48652519 - 48652468
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  48652519 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 48652468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 54239097 - 54239046
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  54239097 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 54239046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 3312493 - 3312551
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatct 299  Q
    ||||||||| |||||||||| |||  ||||||||||||||||||| || ||||||||||||    
T  3312493 aataagtga-tttcacatat-tttaagttttctttcgtttgtttttgttatttcatcatct 3312551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 22485015 - 22485073
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatct 299  Q
    ||||||||| |||| ||||| |||| ||||||||||||||||||| |||||||| ||||||    
T  22485015 aataagtga-tttcgcatat-tttctgttttctttcgtttgtttttgtgatttcgtcatct 22485073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 33937471 - 33937416
Alignment:
Q  228 tcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttg 284  Q
    |||||||| ||||||||||| |||||| ||| |||| | ||||||||||||||||||    
T  33937471 tcttttagtaaaataagtgattttcacgtat-tttcagctttctttcgtttgttttg 33937416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 42398552 - 42398584
Alignment:
Q  266 ttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||||||||||||||| ||||||||||||||    
T  42398552 ttttctttcgtttgtttttgtgatttcatcatc 42398584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 18889084 - 18889204
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcat 297  Q
    ||||||| || |||||||||||||| |||||||||||| ||||||| ||| ||||||||| |||||  ||||||||| |||||||||||||||||||| |    
T  18889084 aaaatcacccctctgaattgtttttatttctcttttagcaaaataaatgattttcacata-ctttcaattttctttcatttgttttggtgatttcatcgt 18889182  T
Q  298 ctagcacaactttgtttatttt 319  Q
    |||||| |||||||||||||||    
T  18889183 ctagcataactttgtttatttt 18889204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 38783077 - 38783196
Alignment:
Q  199 aaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatc 298  Q
    ||||||| ||| |||||||||||||||||||||||||  |||||||||| ||| |||||| |||| |||||| |||||| ||||| |||||||| || ||    
T  38783077 aaatcattcatttgaattgtttttctttctcttttagttaaataagtgattttaacatat-tttcagttttccttcgttcgtttttgtgatttcgtcgtc 38783175  T
Q  299 tagcacaactttgtttatttt 319  Q
     ||||||||||||||||||||    
T  38783176 cagcacaactttgtttatttt 38783196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 32301373 - 32301467
Alignment:
Q  224 tttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgtttatttt 319  Q
    |||||||||||| ||||||||||| |||||||||||||| | | |||||||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  32301373 tttctcttttagcaaaataagtgattttcacatatctttag-tattctttcgtttgtttttgtgatttcatcgtctagcacgactttgtttatttt 32301467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 31427167 - 31427113
Alignment:
Q  265 gttttctttcgtttgttttggtgatttcatcatctagcacaactttgtttatttt 319  Q
    ||||||||||||||||||||||||||||||||| || | |  |||||||||||||    
T  31427167 gttttctttcgtttgttttggtgatttcatcatataacgcgtctttgtttatttt 31427113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 28399394 - 28399341
Alignment:
Q  238 aaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    |||||||||| |||||||||| ||| | |||||||||||||||||| ||||||||    
T  28399394 aaataagtgattttcacatatttttag-ttttctttcgtttgtttttgtgatttc 28399341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 42490902 - 42490994
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||| || || |||||||||||| |||| | |||    ||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||    
T  42490902 aaaatcacccctccgaattgtttttcgttctatcttaattgaataagtga-tttcacatatctt-cagttttctttcgtttgtttttgtgatttc 42490994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 424362 - 424311
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  424362 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 424311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 4882430 - 4882379
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  4882430 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 4882379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 12871671 - 12871722
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  12871671 aataagtga-tttcacatat-tttcagttttctttcgtttgtttttgtgatttc 12871722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 20411582 - 20411677
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatc 295  Q
    ||||||| ||||| ||||||||||||||| | ||  |    ||||||||| |||||||||| |||| ||||||||||||||||||| | |||||||||    
T  20411582 aaaatcacccatccgaattgtttttctttttattcaaattgaataagtga-tttcacatat-tttctgttttctttcgtttgtttttgggatttcatc 20411677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 27534749 - 27534800
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  27534749 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 27534800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 29726667 - 29726616
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  29726667 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 29726616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 29999924 - 29999956
Alignment:
Q  266 ttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||||||||||||||| ||||||||||||||    
T  29999924 ttttctttcgtttgtttttgtgatttcatcatc 29999956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 40948408 - 40948376
Alignment:
Q  266 ttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||||||||||||||| ||||||||||||||    
T  40948408 ttttctttcgtttgtttttgtgatttcatcatc 40948376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 42260959 - 42261063
Alignment:
Q  214 attgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgtt 313  Q
    ||||||||| ||||||| |||| ||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  42260959 attgtttttatttctctattagcaaaataagtgattttcacatattttt-gattttctttcgtttgttttggtgatttcatcgtctagcacgactttgtt 42261057  T
Q  314 tatttt 319  Q
    ||||||    
T  42261058 tatttt 42261063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 31202467 - 31202559
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    |||||||||||||  |||||||||||||||| || ||    ||||||||| |||||||||| |||| ||||| ||||||||||||| ||||||||    
T  31202467 aaaatcatccatccaaattgtttttctttctattataattgaataagtga-tttcacatat-tttctgttttgtttcgtttgtttttgtgatttc 31202559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 2968580 - 2968661
Alignment:
Q  238 aaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatct-agcacaactttgtttatttt 319  Q
    |||||||||| |||||||||| ||| | |||||||||||||||||| |||||||  || |||  |||||||||||||| ||||    
T  2968580 aaataagtgattttcacatatttttag-ttttctttcgtttgtttttgtgattttgtcgtctctgcacaactttgtttgtttt 2968661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 7579934 - 7579883
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  7579934 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 7579883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 9501640 - 9501691
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  9501640 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 9501691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 9628978 - 9628918
Alignment:
Q  197 caaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatat 258  Q
    ||||||||||||||||||||| ||||||||| |||||||  |||||| ||| || |||||||    
T  9628978 caaaatcatccatctgaattg-ttttctttcacttttagttaaataaatgatttccacatat 9628918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 30026959 - 30026908
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  30026959 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 30026908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 39067768 - 39067717
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  39067768 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 39067717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 41361782 - 41361832
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| |||||||    
T  41361782 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgattt 41361832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 17792498 - 17792602
Alignment:
Q  214 attgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgtt 313  Q
    |||||||||||||||||| |||  ||||||| || |||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  17792498 attgtttttctttctcttctagttaaataagcgattttcacatat-tttcagttttctttcgtttgtttttgtgatttcgtcatctagcacgactttgtt 17792596  T
Q  314 tatttt 319  Q
    ||||||    
T  17792597 tatttt 17792602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 20607408 - 20607311
Alignment:
Q  215 ttgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgtt 313  Q
    |||||||||||||| ||||||  || ||||||| |||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  20607408 ttgtttttctttcttttttagttaactaagtgattttcacatat-tttcagttttctttcgtttgtttttgtgatttcttcatctagcacgactttgtt 20607311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 11581227 - 11581121
Alignment:
Q  212 gaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttg 311  Q
    |||||||||||||||||||||| |  |||||||||| ||||| |||| ||| | |||||||| ||||||||| |||||||| || ||||||||  |||||    
T  11581227 gaattgtttttctttctctttttgttaaataagtgattttcatatatttttag-ttttctttggtttgtttttgtgatttcgtcgtctagcacggctttg 11581129  T
Q  312 tttatttt 319  Q
    ||||||||    
T  11581128 tttatttt 11581121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 13548999 - 13548892
Alignment:
Q  211 tgaattgtttttctttctcttttagaaaaataagtgacttt-cacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactt 309  Q
    |||||||||| ||||||||||||||  |||||||| | ||| ||||||| ||||   ||||||| ||| |||||| ||| ||| ||||||||||||||||    
T  13548999 tgaattgtttctctttctcttttagttaaataagtaatttttcacatat-tttcacctttcttttgttggttttg-tgaattcgtcatctagcacaactt 13548902  T
Q  310 tgtttatttt 319  Q
    | ||||||||    
T  13548901 tatttatttt 13548892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 28231208 - 28231114
Alignment:
Q  199 aaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatc 295  Q
    |||||| ||||| |||||||||||| |||| | || |   ||||||||| |||||||||| |||| ||||||||||||||||||| |||||| ||||    
T  28231208 aaatcacccatccgaattgtttttccttctatcttggttgaataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgattccatc 28231114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 325
Target Start/End: Complemental strand, 15261524 - 15261399
Alignment:
Q  199 aaatcatccatctgaattgtttttctttctcttttagaaaaataagtga-ctttcacatatctttcggttttctttcgtttgttttggtgatttcatcat 297  Q
    |||||| || || ||||||||||||||||||||||||  ||||||||||  ||| |||||  |||| ||||||||||| ||| ||| |||||||| |  |    
T  15261524 aaatcacccttccgaattgtttttctttctcttttagctaaataagtgattttttacata-atttcagttttctttcg-ttgattttgtgatttcgttgt 15261427  T
Q  298 ctagcacaactttgtttattttcatctc 325  Q
    ||||||| || ||| ||||||| |||||    
T  15261426 ctagcacgacgttgattatttttatctc 15261399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 10287077 - 10287026
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  10287077 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 10287026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 38535376 - 38535325
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  38535376 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 38535325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 12704737 - 12704787
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| |||||||    
T  12704737 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgattt 12704787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 13740731 - 13740673
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatct 299  Q
    ||||||||| ||||| |||| |||| ||||||||||||||||||| |||||||| ||||||    
T  13740731 aataagtga-tttcatatat-tttctgttttctttcgtttgtttttgtgatttcgtcatct 13740673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 19042600 - 19042568
Alignment:
Q  266 ttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||||||||||||||| ||||||||||||||    
T  19042600 ttttctttcgtttgtttttgtgatttcatcatc 19042568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 39837275 - 39837307
Alignment:
Q  266 ttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||||||||||||||| ||||||||||||||    
T  39837275 ttttctttcgtttgtttttgtgatttcatcatc 39837307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 374304 - 374411
Alignment:
Q  211 tgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaacttt 310  Q
    ||||||||| |||||||||||||||  |||||| ||| |||||| ||| |||| ||||| ||| ||||||||| ||||||||||  |||||||  |||||    
T  374304 tgaattgttattctttctcttttagttaaataaatgattttcacgtat-tttcagttttattttgtttgtttttgtgatttcattgtctagcaagacttt 374402  T
Q  311 gtttatttt 319  Q
    |||||||||    
T  374403 gtttatttt 374411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 14534903 - 14535027
Alignment:
Q  199 aaatcatccatctgaattgtttttctttctcttttagaaaaataagtgact-----ttcacatatctttcggttttctttcgtttgttttggtgatttca 293  Q
    |||||| || |||||||||||||||||| ||||||||  |||||||||| |     ||||||||| |||| ||||||||||||||||||| ||||||||     
T  14534903 aaatcaaccgtctgaattgtttttctttttcttttagttaaataagtgattaagggttcacatat-tttcagttttctttcgtttgtttttgtgatttct 14535001  T
Q  294 tcatctagcacaactttgtttatttt 319  Q
    |  ||||||||  | |||||||||||    
T  14535002 ttgtctagcacgtcattgtttatttt 14535027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 17523621 - 17523515
Alignment:
Q  212 gaattgtttttctttctcttttagaaaaataagtga-ctttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaacttt 310  Q
    ||||||||||||||||||||||||  |||||| |||  |||||||||| || | | ||||||||||| ||||| |||||||| || ||||| ||||||||    
T  17523621 gaattgtttttctttctcttttagttaaataaatgatttttcacatat-ttacagctttctttcgttggtttt-gtgatttcgtcgtctagtacaacttt 17523524  T
Q  311 gtttatttt 319  Q
     ||||||||    
T  17523523 atttatttt 17523515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 12891726 - 12891777
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  12891726 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 12891777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 17331378 - 17331429
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  17331378 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 17331429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 28040679 - 28040730
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  28040679 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 28040730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 33164539 - 33164488
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  33164539 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 33164488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 39179899 - 39179848
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  39179899 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 39179848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 319
Target Start/End: Original strand, 51958357 - 51958480
Alignment:
Q  197 caaaatcatccatctgaattgtttttctttc-tcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatc 295  Q
    ||||||||  |||||||||||||| | |||| ||||||||  |||||||||| ||| | |||| |||| ||||| |||||||| |||| ||||| || ||    
T  51958357 caaaatcactcatctgaattgtttatttttcctcttttagttaaataagtgatttttatatatttttcagttttatttcgtttatttttgtgatctcgtc 51958456  T
Q  296 atctagcacaactttgtttatttt 319  Q
     ||| |||||||||||||||||||    
T  51958457 gtctcgcacaactttgtttatttt 51958480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 26742575 - 26742484
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    ||||||| ||||| ||||||||||||||||| | |||    ||||||||| |||||||||| |||| ||||||||||||||||||| |||||||    
T  26742575 aaaatcacccatccgaattgtttttctttctatcttaattgaataagtga-tttcacatat-tttctgttttctttcgtttgttttcgtgattt 26742484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 46829427 - 46829536
Alignment:
Q  209 tctgaattgtttttctttctcttttagaaaaataagtgacttt-cacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaac 307  Q
    |||||||||||| ||||| ||||||||   ||||||||| ||| ||||||| ||||   ||||||||||| ||||||| |||||| || |||||||| ||    
T  46829427 tctgaattgtttctctttttcttttagttgaataagtgatttttcacatat-tttcatctttctttcgttggttttgg-gatttcgtcctctagcacgac 46829524  T
Q  308 tttgtttatttt 319  Q
    ||||||||||||    
T  46829525 tttgtttatttt 46829536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 6882005 - 6882057
Alignment:
Q  238 aaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    |||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  6882005 aaataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 6882057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 12717190 - 12717137
Alignment:
Q  238 aaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    |||||||||| || ||||||| |||| ||||||||||||||||||| ||||||||    
T  12717190 aaataagtgatttccacatat-tttcagttttctttcgtttgtttttgtgatttc 12717137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 6911730 - 6911781
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  6911730 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 6911781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 29268848 - 29268797
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  29268848 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 29268797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 30202088 - 30202139
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  30202088 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 30202139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 43244493 - 43244402
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    ||||||| || ||||||||||||||| |||| |  ||    ||||||||| |||||||||| ||||| |||||||||||||||||| |||||||    
T  43244493 aaaatcacccctctgaattgtttttccttctatcctaattgaataagtga-tttcacatat-tttcgattttctttcgtttgtttttgtgattt 43244402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 26674422 - 26674480
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatct 299  Q
    ||||||||| |||||||||| ||| | |||||||||||||||||| |||||||| ||||||    
T  26674422 aataagtga-tttcacatattttttg-ttttctttcgtttgtttttgtgatttcgtcatct 26674480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 39837645 - 39837703
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatct 299  Q
    ||||||||| |||||||||| |||| |||||||||||||||||||  ||||||| ||||||    
T  39837645 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttttgatttcgtcatct 39837703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 14810609 - 14810732
Alignment:
Q  195 tccaaaatcatccatctgaattgtttttctttctcttttagaaaaataagtga-ctttcacatatctttcggttttctttcgtttgttttggtgatttca 293  Q
    |||||||| | |||| |||||||||||||||||||||||||  ||||||||||  |||||||||| || | | ||||||||||| ||||| ||||||||     
T  14810609 tccaaaattacccatttgaattgtttttctttctcttttagttaaataagtgatttttcacatat-ttacagctttctttcgttggtttt-gtgatttcg 14810706  T
Q  294 tcatctagcacaactttgtttatttt 319  Q
    || ||||| || ||||| ||||||||    
T  14810707 tcgtctagtacgactttatttatttt 14810732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 15257604 - 15257727
Alignment:
Q  195 tccaaaatcatccatctgaattgtttttctttctcttttagaaaaataagtga-ctttcacatatctttcggttttctttcgtttgttttggtgatttca 293  Q
    |||||||| | |||| |||||||||||||||||||||||||  ||||||||||  |||||||||| || | | ||||||||||| ||||| ||||||||     
T  15257604 tccaaaattacccatttgaattgtttttctttctcttttagttaaataagtgatttttcacatat-ttacagctttctttcgttggtttt-gtgatttcg 15257701  T
Q  294 tcatctagcacaactttgtttatttt 319  Q
    || ||||| || ||||| ||||||||    
T  15257702 tcgtctagtacgactttatttatttt 15257727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 43256649 - 43256570
Alignment:
Q  211 tgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    |||||||||||| ||||||||||||  |||||||||| | |||||||| |||| |||||| |||| ||||||| |||||||    
T  43256649 tgaattgtttttatttctcttttagttaaataagtgattatcacatatttttcagttttc-ttcgcttgtttttgtgattt 43256570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 27705171 - 27705090
Alignment:
Q  209 tctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    |||||||||||||||||||||||||||  |||||||||| ||||| |||| |||   || ||||||||||| ||| |||||||    
T  27705171 tctgaattgtttttctttctcttttagtcaaataagtgattttcatatat-tttttattctctttcgtttgattttgtgattt 27705090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 15674683 - 15674625
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatct 299  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| |||||||| ||||||    
T  15674683 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttcgtcatct 15674625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 37714558 - 37714606
Alignment:
Q  271 tttcgtttgttttggtgatttcatcatctagcacaactttgtttatttt 319  Q
    ||||||||||||| |||||||| || |||||||||||| ||||||||||    
T  37714558 tttcgtttgtttttgtgatttcgtcgtctagcacaactatgtttatttt 37714606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 10623869 - 10623928
Alignment:
Q  260 tttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgtttatttt 319  Q
    |||||||||||||||||||||||| ||| |||  ||||||  ||| ||||||||||||||    
T  10623869 tttcggttttctttcgtttgtttttgtggtttagtcatctcacactactttgtttatttt 10623928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 39990272 - 39990167
Alignment:
Q  212 gaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttg 311  Q
    |||||||||  |||||||||| ||  ||||| |||| |||||||||| |||| ||||||||||||||||||| ||||| || |  |||||||  | ||||    
T  39990272 gaattgtttaactttctcttt-agttaaataggtgattttcacatat-tttcagttttctttcgtttgttttcgtgatatcgttgtctagcatgattttg 39990175  T
Q  312 tttatttt 319  Q
    ||||||||    
T  39990174 tttatttt 39990167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 26161039 - 26161084
Alignment:
Q  249 tttcacatatctttcggttttctttcgtttgttttggtgatttcatc 295  Q
    |||||||||| |||| ||||||||||||||||||| |||||||||||    
T  26161039 tttcacatat-tttctgttttctttcgtttgtttttgtgatttcatc 26161084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 39533087 - 39532995
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    |||||||||  ||||||||||||||| |||| | |||    ||||||||| |||||||||| |||| ||||||||| ||||||||| ||||||||    
T  39533087 aaaatcatctctctgaattgtttttccttctatcttaattgaataagtga-tttcacatat-tttctgttttcttttgtttgttttcgtgatttc 39532995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 6646682 - 6646583
Alignment:
Q  218 tttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatctagcacaactttgtttatt 317  Q
    ||||||||||||||| ||  ||||||  || |||||||||| |||| ||||||||||||||| ||| |||||||| |  |||| ||||||||  ||||||    
T  6646682 tttttctttctcttt-agttaaataaaggattttcacatat-tttcagttttctttcgtttgattttgtgatttcttagtctaacacaacttaatttatt 6646585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 10094491 - 10094542
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  10094491 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 10094542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 42603840 - 42603789
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  42603840 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 42603789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 43847120 - 43847171
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| |||||| |||||||||||||||||||||    
T  43847120 aataagtga-tttcacatat-tttctgttttccttcgtttgttttggtgatttc 43847171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 28664983 - 28664933
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| |||||||    
T  28664983 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgattt 28664933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 45457627 - 45457573
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatc 295  Q
    ||||||||| |||||||||| |||  ||||||||||||||||||| |||||||||||    
T  45457627 aataagtga-tttcacatat-tttatgttttctttcgtttgttttcgtgatttcatc 45457573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 9044193 - 9044100
Alignment:
Q  197 caaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    |||||| ||| ||| ||||||||||| ||||||||||||  |||||||||| |||||||||| |||| |||||  ||| |||||||| ||||||||    
T  9044193 caaaattatctatccgaattgtttttgtttctcttttag-caaataagtgattttcacatat-tttcagtttttattcatttgtttttgtgatttc 9044100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 2304881 - 2304830
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  2304881 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 2304830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 12481441 - 12481390
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  12481441 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 12481390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 12201705 - 12201749
Alignment:
Q  213 aattgtttttctttctcttttagaaaaataagtgactttcacata 257  Q
    ||||||| ||||||||||||||| ||| ||||||| |||||||||    
T  12201705 aattgttattctttctcttttagcaaagtaagtgattttcacata 12201749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 16277263 - 16277295
Alignment:
Q  266 ttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||||||||||||||| ||||||||||||||    
T  16277263 ttttctttcgtttgtttttgtgatttcatcatc 16277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 28317561 - 28317529
Alignment:
Q  266 ttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||||||||||||||| ||||||||||||||    
T  28317561 ttttctttcgtttgtttttgtgatttcatcatc 28317529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 319
Target Start/End: Complemental strand, 15789 - 15672
Alignment:
Q  199 aaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||| | |||| ||||||||||||||||||||||   |||||||||| || |||  || |||| | ||||||||||| ||||| |||||||  || ||    
T  15789 aaatcaccaatctaaattgtttttctttctcttttaattaaataagtgatttccac--atttttcagctttctttcgttggtttt-gtgattttgtcgtc 15693  T
Q  299 tagcacaactttgtttatttt 319  Q
    |||||  ||||||||||||||    
T  15692 tagcatgactttgtttatttt 15672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 1157 - 1106
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  1157 aataagtga-tttcacatat-tttcagttttctttcgtttgtttttgtgatttc 1106  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 7195 - 7144
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  7195 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 7144  T

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Target: scaffold0312 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 6187 - 6238
Alignment:
Q  239 aataagtgactttcacatatctttcggttttctttcgtttgttttggtgatttc 292  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  6187 aataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgatttc 6238  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 35132 - 35192
Alignment:
Q  239 aataagtgactttcacatatcttt-cggttttctttcgtttgttttggtgatttcatcatct 299  Q
    ||||||||| |||||||||| ||| | ||||||||||||||||||| | |||||||||||||    
T  35132 aataagtga-tttcacatatattttctgttttctttcgtttgtttttgcgatttcatcatct 35192  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 74173 - 74264
Alignment:
Q  198 aaaatcatccatctgaattgtttttctttctcttttagaaaaataagtgactttcacatatctttcggttttctttcgtttgttttggtgattt 291  Q
    ||||||| ||||| |||||||||||| |||| |  ||    ||||||||| |||||||||| |||| ||||||||||||||||||| |||||||    
T  74173 aaaatcacccatccgaattgtttttccttctatcctaattgaataagtga-tttcacatat-tttctgttttctttcgtttgtttttgtgattt 74264  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 108667 - 108635
Alignment:
Q  266 ttttctttcgtttgttttggtgatttcatcatc 298  Q
    |||||||||||||||||| ||||||||||||||    
T  108667 ttttctttcgtttgtttttgtgatttcatcatc 108635  T

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