View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5804_high_4 (Length: 250)
Name: NF5804_high_4
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5804_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39176553 - 39176791
Alignment:
| Q |
1 |
catattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaattgtagttaatgcttttaaaggtggt |
100 |
Q |
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| T |
39176553 |
catattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaattgtagttaatgcttttaaaggtggt |
39176652 |
T |
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| Q |
101 |
agagttatatttgataatgtactatttcaaatatgcaattgtccaaatagcataattctgttcttggtataccataacaacaaaaactgcagcttattct |
200 |
Q |
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| T |
39176653 |
agagttatatttgacaatgtactatttcaaatatggaattgtccaaatagcataattctgttcttggtataccataacaacaaaaactgcagcttattct |
39176752 |
T |
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| Q |
201 |
acaattaatttcattttcttcttatttactcttgttcat |
239 |
Q |
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| T |
39176753 |
acaattaatttcattttcttcttatctactcttgttcat |
39176791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39172678 - 39172902
Alignment:
| Q |
1 |
catattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaattgtagttaatgcttttaaaggtggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39172678 |
catattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaattgtagttaatgcttttaa-ggtggg |
39172776 |
T |
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| Q |
101 |
agagttatatttgataatgtactatttcaaatatgcaattgtccaaatagcataattctgttcttggtataccataacaacaaaaactgcagcttattct |
200 |
Q |
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| T |
39172777 |
agagttatatttgataatgtactatttcaaatatgcagttgtccaa-tagcttaattctgttcttggtataccaaaacaacaaaaactgaagctcattct |
39172875 |
T |
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| Q |
201 |
acaatt----aatttcattttcttctt |
223 |
Q |
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|||||| ||||||||||||||||| |
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| T |
39172876 |
acaattaattaatttcattttcttctt |
39172902 |
T |
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Back To:
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