View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5804_high_5 (Length: 227)

Name: NF5804_high_5
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5804_high_5
NF5804_high_5
[»] chr1 (15 HSPs)
chr1 (1-211)||(8939862-8940072)
chr1 (1-207)||(8927439-8927645)
chr1 (1-169)||(8962789-8962957)
chr1 (7-133)||(9235901-9236027)
chr1 (4-152)||(9466205-9466353)
chr1 (13-140)||(9300594-9300721)
chr1 (1-153)||(9242010-9242162)
chr1 (1-137)||(9338020-9338156)
chr1 (1-137)||(9364882-9365018)
chr1 (23-68)||(9085768-9085813)
chr1 (10-68)||(8861365-8861423)
chr1 (7-116)||(9378206-9378315)
chr1 (21-68)||(9069469-9069516)
chr1 (1-59)||(9257069-9257127)
chr1 (21-98)||(8978756-8978833)
[»] chr3 (1 HSPs)
chr3 (1-140)||(9171988-9172127)
[»] scaffold0690 (1 HSPs)
scaffold0690 (1-153)||(2088-2240)
[»] chr6 (1 HSPs)
chr6 (1-153)||(15909866-15910018)
[»] chr4 (1 HSPs)
chr4 (18-68)||(27696535-27696585)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 8939862 - 8940072
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8939862 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 8939961  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagttcccacaaatcctttcaatgcttcatcatcaagtaatagaactgtaaatactgttgccggatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8939962 ttcagatgcttcaaggagagggagacaaattaaaagttcccaccaatcctttcaatgcttcatcatcaactaatagaactgtaaatactgttgccggatg 8940061  T
Q  201 tttgaattcag 211  Q
    |||||||||||    
T  8940062 tttgaattcag 8940072  T

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Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8927439 - 8927645
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  8927439 gatgaagagggagattgtagaattgcaaaaaaactagcaattgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtgg 8927538  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagttcccacaaatcctttcaatgcttcatcatcaagtaatagaactgtaaatactgttgccggatg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||| | |||||    
T  8927539 tgcagatgcttcaaggagagggagacaaattaaaagttcccaccaatcctttcaatgcttcagtatcaactaatagaactgtaaatactgttccaggatg 8927638  T
Q  201 tttgaat 207  Q
    | |||||    
T  8927639 tctgaat 8927645  T

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Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 8962789 - 8962957
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||  ||||||||   ||||    
T  8962789 gatgaagatggagattatagaattgcaaagaaactagcaattgtcggactttggtgcattcagtggcattcagtgcatcgaccagccatgaaaatggtgg 8962888  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagttcccacaaatcctttcaatgcttcatcatcaa 169  Q
    | |||||||| || ||||||  |||||| |||||||||||||| ||||||||||||| |||||| ||||    
T  8962889 tgcagatgctacatggagagttagacaagttaaaagttcccaccaatcctttcaatgattcatcttcaa 8962957  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 9236027 - 9235901
Alignment:
Q  7 gagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtggttcaga 106  Q
    ||||||||| ||||||||||||||||||| ||| | |||||||||||||| ||||||||| |  | ||| |||| || ||||||||| | ||||| || |    
T  9236027 gagggagatgttagaattgcaaagaaacttgcgctggtcggactttggtgtattcagtggaatccggtggatcggccatccatgaaaaccgtggtacaaa 9235928  T
Q  107 tgcttcaaggagagggagacaaattaa 133  Q
    ||||| |||| || ||||| |||||||    
T  9235927 tgcttgaaggtgatggagaaaaattaa 9235901  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 9466353 - 9466205
Alignment:
Q  4 gaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtggttc 103  Q
    |||||||||||||| || ||| |||| ||| | |||||||| |||||| ||||||| ||||||||  |  ||||||| || ||||||||| ||||| | |    
T  9466353 gaagagggagatttcaggattccaaaaaaaatggcgattgttggacttcggtgcatccagtggcaacctatgcatcgtccatccatgaaaactgtgatac 9466254  T
Q  104 agatgcttcaaggagagggagacaaattaaaagttcccacaaatccttt 152  Q
    | ||||| ||||| || |||||||| |||||||| ||||  ||||||||    
T  9466253 aaatgctacaaggtgatggagacaagttaaaagtccccagcaatccttt 9466205  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 9300594 - 9300721
Alignment:
Q  13 gattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtggttcagatgcttc 112  Q
    ||||| ||||||||||| ||| | || ||||| ||| | |||||||||||||||||  |  ||||||| |||||||||||| ||||| | || ||| | |    
T  9300594 gatttcagaattgcaaaaaaaatggcaattgtgggattatggtgcattcagtggcaacctatgcatcgtccgtccatgaaaactgtgttgcaaatgttac 9300693  T
Q  113 aaggagagggagacaaattaaaagttcc 140  Q
    ||||||||||||||||  ||||||||||    
T  9300694 aaggagagggagacaagctaaaagttcc 9300721  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 9242162 - 9242010
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    |||||||||||||||||||||||| |||| ||| | || | ||| ||||| ||||| || || |||||| |  ||||||| ||| | ||||||| ||||     
T  9242162 gatgaagagggagattttagaattccaaaaaaattggcaactgtgggactatggtgtatccaatggcaccctttgcatcgtccggcaatgaaatttgtga 9242063  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagttcccacaaatcctttc 153  Q
    | || || |||||||||||||| ||||  |||||||| || || |||||||||    
T  9242062 tacaaatacttcaaggagagggggacatgttaaaagtaccaactaatcctttc 9242010  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 9338020 - 9338156
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    |||||||| ||||||||||||||| |||| ||| | || | ||| ||||| ||||| || || |||||| |  ||||||| ||| | ||||||||||||     
T  9338020 gatgaagacggagattttagaattccaaaaaaattggcaactgtgggactatggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtga 9338119  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagt 137  Q
    | || ||||| ||||||||||| ||||| ||||||||    
T  9338120 tgcaaatgctccaaggagagggggacaagttaaaagt 9338156  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 9364882 - 9365018
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    |||||||||||||||||||||||| |||| ||| | || | ||| ||||| ||||| || || |||||| |  |||| || ||| | ||||||| ||||     
T  9364882 gatgaagagggagattttagaattccaaaaaaattggcaactgtgggactatggtgtatccaatggcaccctttgcaccgtccgacaatgaaatatgtga 9364981  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagt 137  Q
    | || ||||||||||||||||| ||||| ||||||||    
T  9364982 tacaaatgcttcaaggagagggggacaagttaaaagt 9365018  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 9085813 - 9085768
Alignment:
Q  23 ttgcaaagaaactagcgattgtcggactttggtgcattcagtggca 68  Q
    ||||||||||||| || |||||||||||||||||||||||||||||    
T  9085813 ttgcaaagaaactcgcaattgtcggactttggtgcattcagtggca 9085768  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 8861423 - 8861365
Alignment:
Q  10 ggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggca 68  Q
    |||||| ||| ||||||||||||||| || ||||| ||||||||||||||||| |||||    
T  8861423 ggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgcattcaatggca 8861365  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 9378206 - 9378315
Alignment:
Q  7 gagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtggttcaga 106  Q
    ||||||||| ||||||| ||||||||||| ||| | |||||||||||||| ||||| ||| |  | ||| |||| || ||||||||| | ||||| || |    
T  9378206 gagggagatgttagaatcgcaaagaaacttgcgctggtcggactttggtgtattcaatggaatccggtggatcggccatccatgaaaaccgtggtacaaa 9378305  T
Q  107 tgcttcaagg 116  Q
    ||||| ||||    
T  9378306 tgcttgaagg 9378315  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 9069516 - 9069469
Alignment:
Q  21 aattgcaaagaaactagcgattgtcggactttggtgcattcagtggca 68  Q
    |||||||| |||||| || ||||||||||||||||| |||||||||||    
T  9069516 aattgcaaggaaacttgcaattgtcggactttggtgtattcagtggca 9069469  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9257127 - 9257069
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcat 59  Q
    |||||||||||||||||||||||||| || ||| | || || || ||||||||||||||    
T  9257127 gatgaagagggagattttagaattgcgaaaaaattggcaatcgtgggactttggtgcat 9257069  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 8978833 - 8978756
Alignment:
Q  21 aattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgt 98  Q
    |||||| || ||||| || ||||| |||||||||||||||||||||||| |||   |||| || ||||| ||||||||    
T  8978833 aattgccaaaaaacttgcaattgttggactttggtgcattcagtggcaccccggaaatcgtccatccatcaaatctgt 8978756  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 9171988 - 9172127
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    ||||| |||||||||||||||||||| || ||| | || || || |||||||||||||| || |||||  |  ||||||| ||||| |||||| |||||     
T  9171988 gatgatgagggagattttagaattgcgaaaaaattggcaatcgtgggactttggtgcatccaatggcaacctatgcatcgtccgtctatgaaaactgtga 9172087  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagttcc 140  Q
    | || ||||| |||||||| |||||||| ||| |||||||    
T  9172088 tgcaaatgctgcaaggagatggagacaagttacaagttcc 9172127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 2088 - 2240
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    ||||||||| |||||||||||||| |||| ||| | || |  ||||| || ||||| || || |||||| |  | ||||||||| | ||||||||||||     
T  2088 gatgaagagagagattttagaattccaaaaaaattggcaaccgtcggtctgtggtgtatccaatggcaccctttacatcgaccgacaatgaaatctgtga 2187  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagttcccacaaatcctttc 153  Q
    |  | |||||||||| |||||  ||||| |||||||| || ||||||||||||    
T  2188 taaaaatgcttcaagcagaggcggacaagttaaaagtaccaacaaatcctttc 2240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 15910018 - 15909866
Alignment:
Q  1 gatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtgg 100  Q
    |||||||||||||||||||||||| |||| ||| | || |  ||||| || ||||| || || |||||| |  | ||||||||  | ||||||||||||     
T  15910018 gatgaagagggagattttagaattccaaaaaaattggcaaccgtcggtctgtggtgtatccaatggcaccctttacatcgaccaacaatgaaatctgtga 15909919  T
Q  101 ttcagatgcttcaaggagagggagacaaattaaaagttcccacaaatcctttc 153  Q
    |  | |||||||||| |||||  ||||| |||||||| || ||||||||||||    
T  15909918 taaaaatgcttcaagcagaggcggacaagttaaaagtaccaacaaatcctttc 15909866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 27696535 - 27696585
Alignment:
Q  18 tagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggca 68  Q
    ||||||||||||||| ||| | || || |||||||||||||||||||||||    
T  27696535 tagaattgcaaagaagctatcaatcgtgggactttggtgcattcagtggca 27696585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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