View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5804_low_1 (Length: 388)
Name: NF5804_low_1
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5804_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 32326111 - 32325742
Alignment:
| Q |
8 |
aaattattctttgagattatttttctctgacttaattgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgat |
107 |
Q |
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| T |
32326111 |
aaattattctttgagattatttttctctgacttaattgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctaat |
32326012 |
T |
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| Q |
108 |
cttcctcctctcattggcctttgtaagtcattcttatcattacattacatgcattcttaattacttcggnnnnnnnncttctgcgcgcaatggcagagat |
207 |
Q |
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| T |
32326011 |
cttcctcctctcattggcctttgtaagtcattcttattattacattacattcattcttaattacttcggttttttttcttcttcgcgcaattgcagagat |
32325912 |
T |
|
| Q |
208 |
tatcacttcaatttttcatttcactcttttaaacctaaagtattttgcttttcacgtcgttttaactttaatgacgtg-nnnnnnntacataa----nnn |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32325911 |
tatcacttcaatttttcatttcactcttttaaacctaaagtattttgcttttcacgtcgttttaactttaatgacgtgaaaaaaaatacataatattttt |
32325812 |
T |
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| Q |
303 |
nnnnggattctttgatgtctcggcaacctctcaaggagttgagatatactactgtcaataggtattatat |
372 |
Q |
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| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |
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| T |
32325811 |
ttttgtattatttgatgtctcggcaacctctcaaggagtcgagatatactgctgtcaatcggtattatat |
32325742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 38221283 - 38221210
Alignment:
| Q |
42 |
attgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcc |
115 |
Q |
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| T |
38221283 |
attgctgggatcaccattgctagtttggctattcctcaaggcattagttatgcaaagcttgctaaccttcctcc |
38221210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 103
Target Start/End: Original strand, 31744641 - 31744672
Alignment:
| Q |
72 |
attcctcaaggcattagttatgccaaacttgc |
103 |
Q |
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| T |
31744641 |
attcctcaaggcattagttatgccaaacttgc |
31744672 |
T |
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