View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5804_low_3 (Length: 282)
Name: NF5804_low_3
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5804_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 2139439 - 2139182
Alignment:
| Q |
18 |
aatatagtgtctgccaaacttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctattagaattggaccatacgttagat |
117 |
Q |
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| T |
2139439 |
aatatagtgtctgccaaacttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctattagaattggaccatacattagat |
2139340 |
T |
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| Q |
118 |
ccatgatagaactcatgcaatgtcctttgacaaaagctcctaacaatggttatatttcaatcaaggtatggcttagttaaagaggttgtgaccctctagt |
217 |
Q |
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| T |
2139339 |
ccatgatagaactcatgcaatgtcctttgacaaaagctcctaacaatggttatatttcaatcaaggtatggcttagttaaagaggttgtgaccctctagt |
2139240 |
T |
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| Q |
218 |
tcaatttggttttaatgtattcaatgttgatttaacacattttgcctttatatatttt |
275 |
Q |
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| T |
2139239 |
tcaatttggttttaatgtattcaatgttgatttaacacattttgcctttatatatttt |
2139182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 2144750 - 2144664
Alignment:
| Q |
46 |
tagtttctcataagagtatgtgttgcccttaatctatatactat--gctattagaattggaccatacgttagatccatgatagaact |
130 |
Q |
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| T |
2144750 |
tagtttctcacgagagtatgtgtagccacaaatctatatactatatgctattagaattggaccatacattagatccatgttagaact |
2144664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 2123363 - 2123292
Alignment:
| Q |
24 |
gtgtctgccaaacttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctatt |
95 |
Q |
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| T |
2123363 |
gtgtctactaaactagtatatctagtttctcataagagaatgtgatgccactaatctatatattatgctatt |
2123292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 2144586 - 2144548
Alignment:
| Q |
191 |
tagttaaagaggttgtgaccctctagttcaatttggttt |
229 |
Q |
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| T |
2144586 |
tagttaaagaggttgtgatcatctagttcaatttggttt |
2144548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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