View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5806-Insertion-1 (Length: 283)
Name: NF5806-Insertion-1
Description: NF5806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5806-Insertion-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 43366906 - 43366635
Alignment:
| Q |
9 |
atttccgccatctccgtctgccttctccttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatccttctacttcaa |
108 |
Q |
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| T |
43366906 |
atttcctccatctccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatccttctacttcaa |
43366807 |
T |
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| Q |
109 |
ttacattcctcattccattctgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatcagcaatcccca |
208 |
Q |
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| T |
43366806 |
ttacattcctcattccattttgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatcagcaatcccca |
43366707 |
T |
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| Q |
209 |
tttcacattccggtaatcaaacaatgttctcaccttcnnnnnnnatgcattttttgttatgttgctaatatcttc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
43366706 |
tttcacattccggtaatcaaacaatgttctcacctt---tttttattcattttttgttatgttgctaatatcttc |
43366635 |
T |
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