View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5806_low_1 (Length: 274)
Name: NF5806_low_1
Description: NF5806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5806_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 10559412 - 10559152
Alignment:
| Q |
1 |
taatatgtctgggtgtagcagatggagaccatctgctcctcatttgcttaacaaatataaagaaaaatacaaatgtattttgttcaaattataagcaaaa |
100 |
Q |
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| T |
10559412 |
taatatgtctgggtgtagcagatggtgaccatctgctcctcatttgcttaacaaatataaaaaaaaatacaaatgtattttgttcaaattataagcaaaa |
10559313 |
T |
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| Q |
101 |
gtcataatatattttgtccaaattataag-aaaattcaaaatgtatttgatccaaatttaattatgatcaaatacattttagttttgcttaaatttaaga |
199 |
Q |
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| T |
10559312 |
gtcataatatattttgtccaaattataagaaaaattcaaaatgtatttgatccagatttaattttgatcaaatacattttacttttgcttaaatttaaga |
10559213 |
T |
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| Q |
200 |
ttggagagagtttgtacccaaaaaataaattggagagaatattttaccatctttatccatt |
260 |
Q |
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| T |
10559212 |
ttggagagagtttgtaccaaaaaaaaaaattggagaaagtattttaccatctttatccatt |
10559152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 45776095 - 45776127
Alignment:
| Q |
127 |
aagaaaattcaaaatgtatttgatccaaattta |
159 |
Q |
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| T |
45776095 |
aagaaaagtcaaaatgtatttgatccaaattta |
45776127 |
T |
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