View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808-Insertion-1 (Length: 1089)
Name: NF5808-Insertion-1
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 38587925 - 38587680
Alignment:
| Q |
9 |
gtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgagtttgtatttggtttctttggccgattggaattgtt |
108 |
Q |
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| T |
38587925 |
gtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgaggttgtattttgtttctttggccaattggaattgtt |
38587826 |
T |
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| Q |
109 |
actaagatccattgcatagaaagctaccgctagttggtttggcaattgtcatcaaagttgcaacaaggggacagatttggaagttatgatttatagtagc |
208 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38587825 |
actaagatccattgcatagaaagcta-tgctagttggtttggcaattgtcatcaaaattgcaacaaggggacagatttggaagttatgatttatagtagc |
38587727 |
T |
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| Q |
209 |
aatcacgctagaaaggtatttggtatatgcatttgtttggtcactta |
255 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38587726 |
aatcgcgctagaaaggtatttggtatatgcatttgtttggtcactta |
38587680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 253 - 470
Target Start/End: Complemental strand, 38584905 - 38584688
Alignment:
| Q |
253 |
ttaataatagtacgtagtaatgagtttgggattttgttgatacgacgtggtgtggtgtttgatactattctcggtgcaattatggagttgattatgattt |
352 |
Q |
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| T |
38584905 |
ttaataatagtacgtagtaatgagtttgagattttgttgatacgacgtggtgtggtgtttgatactattctcggtgcaattatggagttgattctgattt |
38584806 |
T |
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| Q |
353 |
gcttggtcacttctaatgttattgtgcttctctgatttggcgttcgaattgtgggttagctgtgtgactgaattggttatgtgtgtgctattagactttt |
452 |
Q |
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| T |
38584805 |
tcttggtcacttcttatgttattgtgcttctttgatttggtgttcgaattgtgggttagctgtgtgactgaattggttatgtgtgtgctattagattttt |
38584706 |
T |
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| Q |
453 |
tgtcggttgactcctctc |
470 |
Q |
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| T |
38584705 |
tgtcggttgactcctctc |
38584688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 587 - 629
Target Start/End: Complemental strand, 38584568 - 38584526
Alignment:
| Q |
587 |
atgacttttgtgctgttggggttcgacttttccggtctcctta |
629 |
Q |
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| T |
38584568 |
atgacttttgtggtgttggggttcgacttttccggtctcctta |
38584526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 21812811 - 21813116
Alignment:
| Q |
9 |
gtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgagtttgtatttggtttctttggccgattggaattgtt |
108 |
Q |
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|||||||||||||| |||||||||| |||||| |||||||||||||| || ||||| |||||| ||||||||| | ||||||| |||||||||||| |
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| T |
21812811 |
gtttgaaagtactcaattgaagaaagaattttgtgccttccgtcattaatccattcgtgtttgaggttgtatttgccta-tttggccaattggaattgtt |
21812909 |
T |
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| Q |
109 |
-actaagatccattgcatagaaagctaccgctagttggtttggcaattgtcatcaaagttgcaacaaggggacagatttggaagttatgatttatagtag |
207 |
Q |
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||||||||||||| | |||||| |||| |||||| |||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||| |
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| T |
21812910 |
tactaagatccattacgtagaaatctacatctagttagtttggcatttgtcatcaaaattgcaataaggggacatatttggaagttatgatttataatag |
21813009 |
T |
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| Q |
208 |
caatcacgctagaaaggtatttggtatatgcatttgtttggtcacttaataatagtacgtagtaatgagtttgggattttgttgatacgacgtggtgtgg |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||| |||| |||| |||||| |
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| T |
21813010 |
caatcacgttagaaaggtatttggtatatgcatttgtttggtcacatgagaata----gtagtaatgagtttggaattttg-tgatttgacgctgtgtgg |
21813104 |
T |
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| Q |
308 |
tgtttgatacta |
319 |
Q |
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|||||||||||| |
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| T |
21813105 |
tgtttgatacta |
21813116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 316 - 466
Target Start/End: Original strand, 21813321 - 21813474
Alignment:
| Q |
316 |
actattctcggtgcaattatggagttgattatgatttgcttggtcacttctaatgttattgtgcttct---ctgatttggcgttcgaattgtgggttagc |
412 |
Q |
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|||||||||| |||||||||||| ||||||||||||| |||||||||| || |||||| |||| |||| ||||||||| || ||| |||||||||| |
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| T |
21813321 |
actattctcgatgcaattatggaattgattatgattttcttggtcactgcttatgttagtgtggttctatgttgatttggcatttgaaatgtgggttagt |
21813420 |
T |
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| Q |
413 |
tgtgtgactgaattggttatgtgtgtgctattagactttttgtcggttgactcc |
466 |
Q |
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||||||||||||||| || | |||||||| ||||| || |||| |||||||||| |
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| T |
21813421 |
tgtgtgactgaattgattgtatgtgtgctgttagatttcttgttggttgactcc |
21813474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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