View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5808-Insertion-5 (Length: 328)

Name: NF5808-Insertion-5
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5808-Insertion-5
NF5808-Insertion-5
[»] chr5 (2 HSPs)
chr5 (185-229)||(32275008-32275052)
chr5 (68-137)||(16505908-16505977)
[»] chr7 (2 HSPs)
chr7 (193-231)||(7559795-7559833)
chr7 (189-222)||(9770892-9770925)
[»] chr8 (1 HSPs)
chr8 (57-137)||(11324412-11324492)


Alignment Details
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 32275008 - 32275052
Alignment:
Q  185 gggatgccaaacatttttgaaatatatattaaactgtgcaaagaa 229  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||    
T  32275008 gggatgccaaacatttttgaaatatatattaaactatgctaagaa 32275052  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 16505977 - 16505908
Alignment:
Q  68 cccctcttagccatatgagggtttcccacaatcatctcctgcctagcactattcgtcatggtctctttgc 137  Q
    |||||||||| |||||||||||||  | | ||| |||| |||||||||||||| ||||||||||| ||||    
T  16505977 cccctcttagacatatgagggtttttcgccatcctctcatgcctagcactatttgtcatggtctccttgc 16505908  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 7559795 - 7559833
Alignment:
Q  193 aaacatttttgaaatatatattaaactgtgcaaagaagt 231  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  7559795 aaacatttttgaaatatatattaaactgtgctaagaagt 7559833  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 9770925 - 9770892
Alignment:
Q  189 tgccaaacatttttgaaatatatattaaactgtg 222  Q
    ||||||||||||||||||||||||||||| ||||    
T  9770925 tgccaaacatttttgaaatatatattaaaatgtg 9770892  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 11324492 - 11324412
Alignment:
Q  57 ctacaccccctcccctcttagccatatgagggtttcccacaatcatctcctgcctagcactattcgtcatggtctctttgc 137  Q
    |||| |||||||||||| ||| ||||||||||||| |||| ||| ||| || |||| ||||||| ||||| ||||| ||||    
T  11324492 ctactccccctcccctcctaggcatatgagggtttgccaccatcctcttctacctaccactattagtcatagtctccttgc 11324412  T

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