View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5808-Insertion-7 (Length: 290)

Name: NF5808-Insertion-7
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5808-Insertion-7
NF5808-Insertion-7
[»] chr4 (1 HSPs)
chr4 (15-290)||(51745106-51745381)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 290
Target Start/End: Complemental strand, 51745381 - 51745106
Alignment:
Q  15 cctctacaatgccaccactgacgttggtgttgccactggggcacaacctcttgatgtggctgtgccatatccatgtctctccctctccccgtcgtcgctt 114  Q
    |||| |||||||||||||| |||||||||||||||||||  | ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  51745381 cctcaacaatgccaccactaacgttggtgttgccactggctcgcaacctcttgatgtcactgtgccatatccatgtctctccctctccccgtcgtcgctt 51745282  T
Q  115 caattttgtcatagttgcatacccgaggtcgtcacctcttcttcctacattttctttttctccaacggtatcatcttcacacagtttgggcacagtcccc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51745281 caattttgtcatagttgcatacccgaggtcgtcacctcttcttcctacattttctttttctccaacggtatcatcttcacacagtttgggcacagtcccc 51745182  T
Q  215 ttctccatgttcccccaatttcatcagttttcgtgtctacactagaataatgaacggagagtattaggttgatttc 290  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||||| |||||  | |||| ||||||||||||    
T  51745181 ttctctatgttcccccaatttcatcagtttccgagtctacactagaatagtgaacatatagtagtaggttgatttc 51745106  T

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