View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808-Insertion-8 (Length: 275)
Name: NF5808-Insertion-8
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808-Insertion-8 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 33413615 - 33413348
Alignment:
| Q |
8 |
atgaaacttgtgagtattaagtgtatctttacttacccgcagaaaagacgtcccataagaagaactactactgagttgagatcataggccattgcataca |
107 |
Q |
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| T |
33413615 |
atgaaacttgtgagtattaagtgtatctttacttacacgcagaaaatacgtcccataagaagaactactactgagttgagatcataggccattgcataca |
33413516 |
T |
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| Q |
108 |
tcatgtttacaattaggagaacaatggcactgaatatgataggtcttagacacaatcagttcgatcacacactaaaataaatagaagcaaaaacatgtgc |
207 |
Q |
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| T |
33413515 |
tcatgtttacaattagaagaacaatggcactgaatatgataggtcttagacacaatcagttcgatcacacactaaaataaatagaagcaaaaacatgtgc |
33413416 |
T |
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| Q |
208 |
aatagtcattgatccgttgatgacaccacaaacacttgcagcagctccaaggttcaatgagtagttgg |
275 |
Q |
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| T |
33413415 |
aatagtcattgatccgttgatgacaccacaaacacttgcagcagctccaaggttcaatgagtagttgg |
33413348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 33420759 - 33420495
Alignment:
| Q |
8 |
atgaaacttgtgagtattaagtgtatctttacttacccgcagaaaagacgtcccataagaagaactactactgagttgagatcataggccattgcataca |
107 |
Q |
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| T |
33420759 |
atgatacttgagagtattatgtgtat-tttacttactcgcagaaaaggcgtcccataagaagaactactactgagttgagatgataggccattgcatact |
33420661 |
T |
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| Q |
108 |
tcatgtttacaattaggagaacaatggcactgaatatgataggtcttagacacaatcagttcgatcacacactaaaataaatagaagcaaaaacatgtgc |
207 |
Q |
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| T |
33420660 |
tgatgtttacaattagatgaacaataacactgaatatgataagtcttagacacgatcggttcgaccacatactgaaataaacagaagcaaaaacttgtgc |
33420561 |
T |
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| Q |
208 |
aatagtcattgatccgttgatgacaccacaaacacttgcagcagctccaaggttcaatgagtagtt |
273 |
Q |
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| T |
33420560 |
aatagccattgatccgacgacaacaccacaaacacttgcagcagctccaaggttcaatgagtagtt |
33420495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 26 - 270
Target Start/End: Original strand, 28811944 - 28812188
Alignment:
| Q |
26 |
aagtgtatctttacttacccgcagaaaagacgtcccataagaagaactactactgagttgagatcataggccattgcatacatcatgtttacaattagga |
125 |
Q |
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| T |
28811944 |
aagtgtaactttacttacccgcagaaaaggcgtcccataagaagaactgctaccgagttaagatcataggccaatgcatacatgatgtttccaatcataa |
28812043 |
T |
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| Q |
126 |
gaacaatggcactgaatatgataggtcttagacacaatcagttcgatcacacactaaaataaatagaagcaaaaacatgtgcaatagtcattgatccgtt |
225 |
Q |
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| T |
28812044 |
gaacaatggtactgaatatgagaggtcttagatacgatcggttcgaccacgcactgaaataaacagaagcaaaaacctgtgcaacagccattgatccgat |
28812143 |
T |
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| Q |
226 |
gatgacaccacaaacacttgcagcagctccaaggttcaatgagta |
270 |
Q |
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| T |
28812144 |
gacgacaccgcaaacacttgcagcagctccaaggttcaatgagta |
28812188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 33491829 - 33491797
Alignment:
| Q |
8 |
atgaaacttgtgagtattaagtgtatctttact |
40 |
Q |
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| T |
33491829 |
atgaaacttgtgagtattaagtgtatatttact |
33491797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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