View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_high_13 (Length: 360)
Name: NF5808_high_13
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 44840982 - 44841332
Alignment:
| Q |
10 |
ataattctagtgtgatgaaacttcccttattttcagtgccatcttgttcatgttcaataattgtacccaatataatgctcatgttccccggtctatgcaa |
109 |
Q |
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| T |
44840982 |
ataattctagtgtgatgaaacttcccttattttcagtgccatcttgttcatgttcaataattgtacccaatataatgctcatgttccccggtctatgcaa |
44841081 |
T |
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| Q |
110 |
tccttgaacggattgagctaatttcgcataaaaagtagttgcaattctttataattttgtcaagtctagattctgaaaccagaaagaaatgcttcatatt |
209 |
Q |
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| T |
44841082 |
tccttgaacggattgagctaatttcgcataaaaagtagttgcaattctttataattttgtcaagtctagattctgaaaccagatagaaatgcttcatatt |
44841181 |
T |
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| Q |
210 |
atcagataattgcatccaatatttgatcatgttttgtaattg------------aaaggagataatcaacaatagctttaacttggaaaactttcttcca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44841182 |
atcagataattgcatccaatatttgatcatgttttgtaattgaataaccaattaaaaggagataatcaacaatagctttaacttggaaaactttcttcca |
44841281 |
T |
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| Q |
298 |
aaattgacatatctcgtcgtcctaaacttgaaatgcatgtatccaacaaat |
348 |
Q |
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| T |
44841282 |
aaattgacacatctcgtcgtcctaaacttgaaatgcatgtatccaacaaat |
44841332 |
T |
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