View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_high_19 (Length: 293)
Name: NF5808_high_19
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8948483 - 8948221
Alignment:
| Q |
1 |
actttaacattatgttacgaatgttgaaaagtctccaaacataaaagatgatgctataatatctagtgtagaagttaaagaaaaatatgttgacataaaa |
100 |
Q |
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| T |
8948483 |
actttaacattatgttacgaatgttgaaa-gtctccaaacataaaagatgatgctataatatctagtgtagaagttaaagaaaaatatgttgacataaaa |
8948385 |
T |
|
| Q |
101 |
tgttgctgttgagtgaagtatgtggtatccctaacgaaattatggtggttatttaagtgctgttagaaagggaggaggtgaaagtgcttaaataaacgaa |
200 |
Q |
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| T |
8948384 |
tgttgctgttgagtgaaatatgtggtatccctatcgaaattatggtggttatttaagtgctgttagaaagggaggaggtgaaagtgcttaaataaacgaa |
8948285 |
T |
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| Q |
201 |
gggaaggaaatcaatttgcaaatatttagtacaagtaaatatttcgagcactaaaattatataa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8948284 |
gggaaggaaatcaatttgcaaatatttagtacaagtaaatatttcgagcactaaaattatataa |
8948221 |
T |
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