View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_high_2 (Length: 619)
Name: NF5808_high_2
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 38151473 - 38150849
Alignment:
| Q |
1 |
acagaaattgtacctgatcccttagctgatcaagtagtgtgctcccaattaatccaggtccaattatgcccattgccattgtggtttgtgagttataaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38151473 |
acagaaattgtacctgatcccttagctgatcaagtagtgtgctcccaattaatccaggtccaattatgcccattgccattgtggtttgtgagttataaaa |
38151374 |
T |
|
| Q |
101 |
tctggaatggacagcccgcagagcctttatagaatcctctcgcttaagaacaacagtaacattgtactcagagcaaccttgtgctatagcaaggatattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38151373 |
tctggaatggacagcccgcagagcctttatagaatcctctcgcttaagaacaacagtaacattgtactcagagcaaccttgtgctatagcaaggatattt |
38151274 |
T |
|
| Q |
201 |
atgttggcctgtttcatttataa----------------------caaatgaataaataaacaaatgaaaacaacaacatatcaaaacatttccttcatc |
278 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38151273 |
atgttggcctgtttcatttataagtttgaccataaacaagttagacaaatgaataaataaacaaatgaaaacaccaacatatcaaaacatttccttcatc |
38151174 |
T |
|
| Q |
279 |
tttctttgatatctttttagcgatcaatattttcccctcttcttccttaatgtatttcacctgatttaagtcttgtttttctttcactacttttagcaag |
378 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38151173 |
tttatttgatatctttttagcgatcaatattttcccctcttcttccttaatgtatttcacctgatttaagtcttgtttttctttcactacttttagcaag |
38151074 |
T |
|
| Q |
379 |
tttatagatacctccttccctttatttattgtctaggggatggtatagcccatagaaattctcttactttagcttcacttattggctttcaagtgtctta |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38151073 |
tttatagatacctccttccctttatttattgtctaggggatggtatagcccatagaaattctcttactttagcttcacttattggctttcaagtgtctta |
38150974 |
T |
|
| Q |
479 |
ctaaactaaaataagaacacactcataaatttacataacatagtattctaaacttaacaaaaatggtcatacaagtacgatacctgagccaatgcattga |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38150973 |
ctaaactaaaataagaacacactcataaatttacataacatagtattctaaacttaacaaaaatggtcatacaagtacgatacctgagccaatgcattga |
38150874 |
T |
|
| Q |
579 |
aaagggtggcgctaactcctggagt |
603 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
38150873 |
aaagggtggcgctaactcctggagt |
38150849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 35095112 - 35095314
Alignment:
| Q |
12 |
acctgatcccttagctgatcaagtagtgtgctcccaattaatccaggtccaattatgcccattgccattgtggtttgtgagttataaaatctggaatgga |
111 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || |||||||| || |||||| |||| ||||||||||||||||| |
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| T |
35095112 |
acctgatcccttagttgatcaagtagcgtgctcccaattaatcctggtccaataattcccattgctatggtggttcttgagagataaaatctggaatgga |
35095211 |
T |
|
| Q |
112 |
cagcccgcagagcctttatagaatcctctcgcttaagaacaacagtaacattgtactcagagcaaccttgtgctatagcaaggatatttatgttggcctg |
211 |
Q |
| |
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||||||| | ||| |||||| |||||||||||||| ||||||||||| ||| |||||||| |||||||||||||| ||| ||| |||||| |||||||| |
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|
| T |
35095212 |
cagcccgtaaagcttttatactatcctctcgcttaataacaacagtaatattatactcagaacaaccttgtgctatggcacggacatttatattggcctg |
35095311 |
T |
|
| Q |
212 |
ttt |
214 |
Q |
| |
|
||| |
|
|
| T |
35095312 |
ttt |
35095314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 604
Target Start/End: Original strand, 35095422 - 35095466
Alignment:
| Q |
560 |
acctgagccaatgcattgaaaagggtggcgctaactcctggagtg |
604 |
Q |
| |
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|||| ||||||||| |||||||||||||| |||||||| |||||| |
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| T |
35095422 |
accttagccaatgcgttgaaaagggtggcactaactccaggagtg |
35095466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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