View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_high_3 (Length: 616)
Name: NF5808_high_3
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Original strand, 5684234 - 5684819
Alignment:
| Q |
19 |
atccaaccctgtccaaaacccagcaacacaaacccccttcatctacaatgtcaaaaccaatacaaaaatccacaaatcaatcccattaatcttcacaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684234 |
atccaaccctgtccaaaacccagcaacacaaacccccttcatctacaatgtcaaaaccaatacaaaaatccacaaatcaatcccattaatcttcacaaac |
5684333 |
T |
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| Q |
119 |
cctccaattttccactatctacatttcccatcacaattcaatccccttcaaacaacaacaatggaactctcatcctctttttcactctccccaaaaccaa |
218 |
Q |
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| T |
5684334 |
cctccaattttccactatctacatttcccatcacaattcaatccccttcaaacaacaacaatggaactctcatcctctttttcactctccccaaaaccaa |
5684433 |
T |
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| Q |
219 |
ctaacttctcattctcatcctcattctctcctttccccatccaaatcctaatcaaaaacaccaaatcccgaaactaccctcttcacgttctcgcagtcgc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5684434 |
ctaacttctcattctcatcctcattctctcctttccccatccaaatcctaatcaaaaacaccaaatcccgaaactaccctcttcacgttctcgcagttgc |
5684533 |
T |
|
| Q |
319 |
aatagacccaacaaaagacttccctagaaataacaatcctcaacgacttctaaaagaactagcagaacgcnnnnnnntcactaacccaaaatcaaaatca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5684534 |
aatagacccaacaaaagacttccctagaaataacaatcctcaacgacttctaaaagaactagcagaacgcaaaaaaatcactaacccaaaatcaaaatca |
5684633 |
T |
|
| Q |
419 |
ccaccaagacgttacattttaaaacccccactagacgataaaaaactcgcagaaagatttctcaacagtccacaactttcactaaaatcattcccattgt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684634 |
ccaccaagacgttacattttaaaacccccactagacgataaaaaactcgcagaaagatttctcaacagtccacaactttcactaaaatcattcccattgt |
5684733 |
T |
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| Q |
519 |
taagttcttgtctaccttcatcgcgccttaacaatgccgataaattatggatcgatgagtatttactcgaagcgaaacaagccctt |
604 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684734 |
taagttcttgtctaccttcattgcgccttaacaatgccgataaattatggatcgatgagtatttactcgaagcgaaacaagccctt |
5684819 |
T |
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