View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_high_5 (Length: 459)
Name: NF5808_high_5
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 4 - 308
Target Start/End: Complemental strand, 39386392 - 39386100
Alignment:
| Q |
4 |
atgtcgaataatattaagttaaatgaattaacttttgagaatacataccttctcattcatgcttctttttcaaatgacatcctcaatcttcttaagaatg |
103 |
Q |
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| T |
39386392 |
atgtccaacaatattaagttaaatgaattaacttttgagaatacataccttct-------------ttttcaaataacatcatcaatcttcttaagaatg |
39386306 |
T |
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| Q |
104 |
atatgaccaatccnnnnnnnn-aagagagtatattttgtttcggttattgtttgattgtcctcgtaacaannnnnnnnngtatatttaaacacaagagag |
202 |
Q |
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||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39386305 |
atacgaccaaccatttttttttaagagagtatattttatttcggttattgtttgattgtcctcgtaacaatttttttttgtatatttaaacacaagagag |
39386206 |
T |
|
| Q |
203 |
aactagaatgtaatatacgagacatttactagcattattatattattaaatctgtactttgtgttaaatatttgaatctgctaaaacttatgcatttaaa |
302 |
Q |
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||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39386205 |
aactagaatgtaatatatgagagatttactatcattattatattattaaatctgtactttgtgttaaatatttaaatctgctaaaacttatgcatttaaa |
39386106 |
T |
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