View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_high_6 (Length: 458)
Name: NF5808_high_6
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 442
Target Start/End: Original strand, 484715 - 485150
Alignment:
| Q |
7 |
tagattatactgcttaggatattttccagtataaaccgcgtctgagaaaaacatctgaaacgagtaccgaacttgacaaagttcataccataccattgca |
106 |
Q |
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| T |
484715 |
tagatcattctgcttaggatattttccagtataaaccgcgtctgaaaaaaacatctgaaacgagtaccgaacttgacaaagttcataccataccattgca |
484814 |
T |
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| Q |
107 |
tcctcactcttacacctattcattaaatctttgcttgctttctcaatgcattctttgcaaactgtggagtttgttatgtctcctctgcatagtgcctgtc |
206 |
Q |
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| T |
484815 |
tcctcactcttacacctattcattaaatctttgcttgctttctcaatgcattctttgcaaactgtggagtttgttatgtctcctctgcatagtgcctgtc |
484914 |
T |
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| Q |
207 |
catatactttgtctagtccttgtcctattgatgtgttgttgaagtaacttgtgtttgaagctactatattggaggagagagtttccatgagaagcttgag |
306 |
Q |
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| T |
484915 |
catacactttgtctagtccttgtcctattgatgtgttgttgaagtaacttgtgtttgaagctgctatattggaggagagagtttccatgagaagcttgag |
485014 |
T |
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| Q |
307 |
attcttatggaatgaagtgttggaagtgtaaaatgggaaattatctggacagtaagtatctataataagatggtctgtaccagaaacaacatgcaacatt |
406 |
Q |
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| T |
485015 |
attcttatggaatgaagtgttggaagtgtaaaatgggaaattatctggacagtaagtatctataataagatggtctgtacaagaaacaacatgcaacatt |
485114 |
T |
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| Q |
407 |
aaaatgatgattaacataatcatagttgaagacatt |
442 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
485115 |
aaaatgatgattaacataatcatagttgaagacatt |
485150 |
T |
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