View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5808_high_7 (Length: 439)

Name: NF5808_high_7
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5808_high_7
NF5808_high_7
[»] chr7 (4 HSPs)
chr7 (13-356)||(46064789-46065137)
chr7 (291-348)||(23780474-23780531)
chr7 (291-348)||(43920612-43920669)
chr7 (291-348)||(40706111-40706168)
[»] chr4 (3 HSPs)
chr4 (286-356)||(26929290-26929360)
chr4 (291-347)||(49152545-49152601)
chr4 (291-348)||(38393572-38393629)
[»] chr1 (20 HSPs)
chr1 (291-348)||(29812834-29812891)
chr1 (291-348)||(48040178-48040235)
chr1 (291-348)||(48042230-48042287)
chr1 (291-348)||(48049412-48049469)
chr1 (291-347)||(5126509-5126565)
chr1 (291-347)||(48033108-48033164)
chr1 (291-347)||(48034716-48034772)
chr1 (291-347)||(48035763-48035819)
chr1 (291-347)||(48041329-48041385)
chr1 (291-347)||(48050614-48050670)
chr1 (291-347)||(48055948-48056004)
chr1 (282-348)||(39972795-39972861)
chr1 (291-348)||(22908329-22908386)
chr1 (291-344)||(29813662-29813715)
chr1 (291-347)||(48042840-48042896)
chr1 (286-347)||(48036721-48036782)
chr1 (291-348)||(48050018-48050075)
chr1 (291-348)||(48053132-48053189)
chr1 (296-347)||(48054322-48054373)
chr1 (291-348)||(48054684-48054741)
[»] chr6 (5 HSPs)
chr6 (291-347)||(992452-992508)
chr6 (278-348)||(10754606-10754676)
chr6 (291-340)||(32678635-32678684)
chr6 (291-348)||(10750289-10750346)
chr6 (291-332)||(18613093-18613134)
[»] chr3 (7 HSPs)
chr3 (291-347)||(34974808-34974864)
chr3 (291-347)||(47565687-47565743)
chr3 (291-347)||(53682987-53683043)
chr3 (291-348)||(31125758-31125815)
chr3 (291-348)||(38930480-38930537)
chr3 (291-348)||(53107644-53107701)
chr3 (295-356)||(32170503-32170564)
[»] chr2 (7 HSPs)
chr2 (291-347)||(6796502-6796558)
chr2 (291-347)||(7181569-7181625)
chr2 (291-347)||(13327006-13327062)
chr2 (291-348)||(6801063-6801120)
chr2 (291-348)||(35926134-35926191)
chr2 (291-348)||(39990585-39990642)
chr2 (293-332)||(35920159-35920198)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 46065137 - 46064789
Alignment:
Q  13 aatattggggagataaaattaaacttacactgttgctggtggtgttagacatttttgttccaaaaataagcgattctag------agaaaattggttatt 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||      ||||||||||  |||    
T  46065137 aatattggggagataaaattaaacttacactgttgcttgtggtgttagacatttttgttcgaaaaataagcgattctagttctagagaaaattgga-att 46065039  T
Q  107 aggatgatgagtgaaggtgttcgttgatgattgatt----tgaaacagaataaaatttgaattggggattt-aggagtgaaacgaaaccctagttaaatt 201  Q
    ||||||||||||||||||||||||| ||||||||||    ||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||    
T  46065038 aggatgatgagtgaaggtgttcgtttatgattgattgatttgaaacagaataaaatttgaattggggattttaggagtgaaac-----cctagttaaatt 46064944  T
Q  202 ttgcgagaaagacaaaaacaaggaaaactcttctactaattgaaataattatataatttacaacatcaaatcgaatatcaaaacgggtgtttggtctagt 301  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  46064943 ttgcgagaaagacaaaaacaatgaaaactctcctactaattgaaataattatataatttacaacattaaatcgaacatcaaaacgggtgtttggtctagt 46064844  T
Q  302 ggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46064843 ggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 46064789  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 23780474 - 23780531
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  23780474 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 23780531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 43920612 - 43920669
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  43920612 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 43920669  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 40706111 - 40706168
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||| |||||||||||||||  |||||||||||||  |||||| |||||||    
T  40706111 tttggtctagttgtatgattctcgcttaaggtgcgagaggtcccgagttcaattctcg 40706168  T

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Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 26929360 - 26929290
Alignment:
Q  286 gggtgtttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26929360 gggtgtttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 26929290  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 49152601 - 49152545
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  49152601 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 49152545  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 38393629 - 38393572
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  38393629 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 38393572  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 29812891 - 29812834
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  29812891 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 29812834  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 48040178 - 48040235
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  48040178 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 48040235  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 48042230 - 48042287
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  48042230 tttggtctagtggtatgattctcgcttcgggtgcgagaggttccgagttcgattctcg 48042287  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 48049412 - 48049469
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  48049412 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 48049469  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 5126509 - 5126565
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  5126509 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 5126565  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 48033108 - 48033164
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  48033108 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48033164  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 48034716 - 48034772
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  48034716 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48034772  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 48035763 - 48035819
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  48035763 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48035819  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 48041329 - 48041385
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  48041329 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48041385  T

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Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 48050614 - 48050670
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  48050614 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48050670  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 48055948 - 48056004
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  48055948 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48056004  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 39972861 - 39972795
Alignment:
Q  282 aaacgggtgtttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  39972861 aaacgggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 39972795  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 22908329 - 22908386
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  22908329 tttggtctagtggtatgattctcgcttagggtgcgagaggtctcgagttcaattctcg 22908386  T

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Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 29813715 - 29813662
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgatt 344  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||||||||    
T  29813715 tttggtctagtggtttgattctcgctttgggtgcgagaggtcctgagttcgatt 29813662  T

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Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 48042840 - 48042896
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||    
T  48042840 tttggtctagtggtatgattctcgctttgggtgcgagaggcccggagttcgattctc 48042896  T

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Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 48036721 - 48036782
Alignment:
Q  286 gggtgtttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||  ||||| |||||||    
T  48036721 gggtatttggtctagtggtatgattctcgctttgggtgccagaggtccggagtttgattctc 48036782  T

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Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 48050018 - 48050075
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||| |||||||   ||||||||||||||    
T  48050018 tttggtctagtggtatgattctcgctttgggtgtgagaggttccgagttcgattctcg 48050075  T

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Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 48053132 - 48053189
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    |||||||||||||||| |||||||||| ||||||||||||||  |||||| |||||||    
T  48053132 tttggtctagtggtataattctcgctttgggtgcgagaggtcccgagttcaattctcg 48053189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 48054322 - 48054373
Alignment:
Q  296 tctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    |||||||  ||||||||||||| |||||||||||||| ||||||||||||||    
T  48054322 tctagtgaaatgattctcgctttgggtgcgagaggtcctgagttcgattctc 48054373  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 48054684 - 48054741
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    |||||||||| |||||||||||||||| |||||||||||||   |||||| |||||||    
T  48054684 tttggtctagaggtatgattctcgctttgggtgcgagaggttccgagttcaattctcg 48054741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 992508 - 992452
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  992508 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 992452  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 10754676 - 10754606
Alignment:
Q  278 atcaaaacgggtgtttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  10754676 atcaaaaagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 10754606  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 32678684 - 32678635
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttc 340  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  32678684 tttggtctagtggtatgattctcgctttgggtgtgagaggtcctgagttc 32678635  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 10750346 - 10750289
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    |||| |||||||||||||||||||||| |||||| |||||||  |||||| |||||||    
T  10750346 tttgatctagtggtatgattctcgcttagggtgcaagaggtcccgagttcaattctcg 10750289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 18613093 - 18613134
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtc 332  Q
    |||| ||||||||||||||||| |||| ||||||||||||||    
T  18613093 tttgatctagtggtatgattcttgcttagggtgcgagaggtc 18613134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 34974808 - 34974864
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  34974808 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 34974864  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 47565743 - 47565687
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  47565743 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 47565687  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 53682987 - 53683043
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  53682987 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 53683043  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 31125758 - 31125815
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  31125758 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 31125815  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 38930537 - 38930480
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  38930537 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 38930480  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 53107644 - 53107701
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  53107644 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 53107701  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 32170503 - 32170564
Alignment:
Q  295 gtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 356  Q
    |||||||||||||||||| |||| |||||||||||||||  |||| ||||||  ||||||||    
T  32170503 gtctagtggtatgattctagcttggggtgcgagaggtcgcaagtttgattcttccaacaccc 32170564  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 6796502 - 6796558
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  6796502 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 6796558  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 7181569 - 7181625
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  7181569 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 7181625  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 13327062 - 13327006
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 347  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  13327062 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 13327006  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 6801120 - 6801063
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  6801120 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 6801063  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 35926191 - 35926134
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  35926191 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 35926134  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 39990585 - 39990642
Alignment:
Q  291 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 348  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  39990585 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 39990642  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 35920198 - 35920159
Alignment:
Q  293 tggtctagtggtatgattctcgcttcgggtgcgagaggtc 332  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  35920198 tggtctagtggtatgattcttgcttagggtgcgagaggtc 35920159  T

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