View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_high_8 (Length: 410)
Name: NF5808_high_8
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 24156483 - 24156095
Alignment:
| Q |
7 |
taaattattctgccatagaagtaaactcttcagcttgttaaggtttccaatttgagctggaattgaacctgagagagagttctgatacaaataaaggtgc |
106 |
Q |
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| T |
24156483 |
taaattgttctgccatagaagtaaactcttcagcttgttaaggtttccaatttgagctggaattgaacctgagagagagttctgatacaaataaaggtgc |
24156384 |
T |
|
| Q |
107 |
tgcaactcactgcaatttccaatctcttgaggaattgatcctgacaatagagttgtgtaaatagctatggttttgattcttttcagcatttggattgaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24156383 |
tgcaactcactgcaatttccaatctcttgaggaattgagcctgacaatagagttgtgtaaatagctatggttttgattcttttcagcatttggattgaag |
24156284 |
T |
|
| Q |
207 |
aaggaatgcttcctgaaatacttgtttctgcaaggcctaataagatcaagtttgtgcagtttccaatctccaaagggatctcacccttgagatttttatt |
306 |
Q |
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| T |
24156283 |
aaggaatgcttcctgaaatacttgtttctgcaaggcctaataagatcaagtttgtgcagtttccaatctccaaagggatctcacccttgagatttttatt |
24156184 |
T |
|
| Q |
307 |
tccaccagctctaaacacttgaagcttgttcaaaaaaccaatactctttggaatttcaccactcaaatgattatcatagagtgtaaagt |
395 |
Q |
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| T |
24156183 |
tccaccagctctaaacacttgaagcttgttcaaaaaaccaatactctttggaatttcaccactcaaatgattatcatagagtgtaaagt |
24156095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 363
Target Start/End: Complemental strand, 42215016 - 42214706
Alignment:
| Q |
53 |
ccaatttgagctggaattgaacctgagagagagttctgatacaaataaaggtgctgcaactcactgcaatttccaatctcttgaggaattgatcctgaca |
152 |
Q |
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|||||||||| |||||||||||| || | ||||||||||||||||| || | |||||||||||||||||| || ||||||| || || || ||||||| |
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| T |
42215016 |
ccaatttgaggtggaattgaaccagaaattgagttctgatacaaatacagattctgcaactcactgcaattccctatctcttctggtatagagcctgaca |
42214917 |
T |
|
| Q |
153 |
atagagttgtgtaaatagctatggttttgattcttttcagcatttggattgaagaaggaatgcttcctgaaatacttgtttctgcaaggcctaataagat |
252 |
Q |
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| ||||||||||||| |||||||| | | | |||| ||||| |||||||||||||| || || ||||| | ||||||||||| ||||| | || |
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| T |
42214916 |
actgagttgtgtaaatggctatggtctgtaatttttttagcatccctattgaagaaggaatactaccggaaatgccggtttctgcaagacctaacatgac |
42214817 |
T |
|
| Q |
253 |
caagtttgtgcagtttccaatctccaaagggatctcacccttgagatttttatttccaccagctctaaacacttgaagcttgttcaaaaaaccaatactc |
352 |
Q |
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|||||| |||||| |||| |||||| | || | ||||||||||| |||||||| || |||||||| || ||||||||||| | || || ||||||||| |
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| T |
42214816 |
caagttggtgcagcttccgatctccgatggcagctcacccttgaagtttttattgcctccagctctgaatacttgaagcttacttaataagccaatactc |
42214717 |
T |
|
| Q |
353 |
tttggaatttc |
363 |
Q |
| |
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|| |||||||| |
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| T |
42214716 |
ttcggaatttc |
42214706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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