View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_1 (Length: 792)
Name: NF5808_low_1
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 318 - 776
Target Start/End: Original strand, 5828268 - 5828728
Alignment:
| Q |
318 |
aataaggagataatcaaccaaacagacaaatcaacagagtgagaatcaataatcaatcaaacataagaagaagcaaccaaagagagaaataaaaccaaat |
417 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
5828268 |
aataaagagataatcaaccaaacagacaaatcaacagagtgagaatcaataataaatcaaacacaagaagaagcaaccaaagagagaaatcaaaccaaat |
5828367 |
T |
|
| Q |
418 |
caaacaatcaaccatagaaactgcattgtcaaagtggttatttatctaaatcccacatcgtgtagtaagaagacaaaataagtagatggttattaaaaat |
517 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5828368 |
caaacaatcaaccatagaaattgcagtgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat |
5828467 |
T |
|
| Q |
518 |
atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgcgactcgggtaattgtatgtcatgagagagtttgcaattttgt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828468 |
atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgcgactcgggtaattgtatgtcatgagagagtttgcaattttgt |
5828567 |
T |
|
| Q |
618 |
cctttgtaattttct--gagttgtaaggctttgcagttttactagagaagttatatgagagagtttgcaattttctcctgtaaaaagttgcaatttgagt |
715 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828568 |
cctttgtaattttctgagagttgtaaggctttgcagttttactagagaagttatatgagagagtttgcaattttctcctgtaaaaagttgcaatttgagt |
5828667 |
T |
|
| Q |
716 |
aataaaatatttttggtaggagattgtggatgtaggtatgaagtgccgaaccacaatcttg |
776 |
Q |
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| T |
5828668 |
aataaaatatttttgttaagagattgtggatgtaggtatgaagtgccgaaccacaatcttg |
5828728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 5827867 - 5827975
Alignment:
| Q |
1 |
cataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataacttattatcttcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827867 |
cataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataacttattatcttcata |
5827966 |
T |
|
| Q |
101 |
tttcccctg |
109 |
Q |
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||||||||| |
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| T |
5827967 |
tttcccctg |
5827975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 5828109 - 5828171
Alignment:
| Q |
162 |
agagagagagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat |
224 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5828109 |
agagagtgagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat |
5828171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 669 - 775
Target Start/End: Complemental strand, 6853301 - 6853197
Alignment:
| Q |
669 |
tatgagagagtttgcaattttctcctgtaaaaagttgcaatttgagtaataaaatatttttggtaggagattgtggatgtaggtatgaagtgccgaacca |
768 |
Q |
| |
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|||||||| |||| ||||||||| | ||||||| ||| | ||||||||||||| |||||||| | ||||||||||||||| |||| || || | ||||| |
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| T |
6853301 |
tatgagagggtttacaattttctacggtaaaaa-ttgtagtttgagtaataaa-tatttttgttgagagattgtggatgtaagtataaattgtcaaacca |
6853204 |
T |
|
| Q |
769 |
caatctt |
775 |
Q |
| |
|
||||||| |
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|
| T |
6853203 |
caatctt |
6853197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 565
Target Start/End: Complemental strand, 6853560 - 6853441
Alignment:
| Q |
444 |
tgtcaaagtggttatttatctaaatcccacatcgtgtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcac |
543 |
Q |
| |
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||||||||||| |||| ||| || || ||||||| || || |||||| |||| | || || | |||||| ||||| ||||||||||| | ||||||||| |
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| T |
6853560 |
tgtcaaagtggatattcatccaagtcgcacatcgggtggtgagaagaaaaaagaggttgaggcttattataaata--gagttatattgtgatttcttcac |
6853463 |
T |
|
| Q |
544 |
cataacatctctagtatcttgg |
565 |
Q |
| |
|
|| |||||||||||| |||||| |
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| T |
6853462 |
cacaacatctctagtctcttgg |
6853441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 735 - 775
Target Start/End: Original strand, 36097692 - 36097732
Alignment:
| Q |
735 |
gagattgtggatgtaggtatgaagtgccgaaccacaatctt |
775 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||| |
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| T |
36097692 |
gagattgtggatgtaggtatgaaatgtcgaaccacaatctt |
36097732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 558
Target Start/End: Complemental strand, 32496079 - 32496026
Alignment:
| Q |
505 |
ggttattaaaaatatagagttatattgagttttcttcaccataacatctctagt |
558 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||| |||| |||||||| |
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| T |
32496079 |
ggttattataaatatagagttaaattgagttttcttcactttaacttctctagt |
32496026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 735 - 776
Target Start/End: Original strand, 25287832 - 25287873
Alignment:
| Q |
735 |
gagattgtggatgtaggtatgaagtgccgaaccacaatcttg |
776 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
25287832 |
gagattgtgaatgtaggtatgaagtgtcgaaccacaatcttg |
25287873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 760
Target Start/End: Complemental strand, 44683387 - 44683294
Alignment:
| Q |
666 |
ttatatgagagagtttgcaattttctcct-gtaaaaagttgcaatttgagtaataaaatatttttggtaggagattgtggatgtaggtatgaagtg |
760 |
Q |
| |
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|||||||||| | ||||||||||||||| ||||||| || || ||||||||||||||||||| | | |||||||| ||||||||||||||||| |
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| T |
44683387 |
ttatatgagaaaccttgcaattttctccttgtaaaaa-ttacatgttgagtaataaaatatttt-gttgagagattgtagatgtaggtatgaagtg |
44683294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 544
Target Start/End: Original strand, 31105937 - 31105967
Alignment:
| Q |
514 |
aaatatagagttatattgagttttcttcacc |
544 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
31105937 |
aaatatagagttatattgagttttcttcacc |
31105967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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