View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5808_low_10 (Length: 404)

Name: NF5808_low_10
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5808_low_10
NF5808_low_10
[»] chr7 (7 HSPs)
chr7 (54-397)||(17743704-17744047)
chr7 (54-397)||(17734464-17734807)
chr7 (54-397)||(16720480-16720823)
chr7 (54-397)||(17697494-17697837)
chr7 (54-397)||(17716413-17716756)
chr7 (54-397)||(16729353-16729696)
chr7 (54-397)||(17706425-17706768)
[»] chr8 (2 HSPs)
chr8 (111-168)||(21465819-21465876)
chr8 (89-156)||(9693235-9693302)
[»] chr4 (1 HSPs)
chr4 (105-156)||(37147601-37147652)
[»] chr3 (6 HSPs)
chr3 (105-164)||(47398188-47398247)
chr3 (108-159)||(5155454-5155505)
chr3 (105-152)||(46490225-46490272)
chr3 (108-158)||(46543301-46543351)
chr3 (243-308)||(46497386-46497451)
chr3 (99-159)||(51942277-51942337)
[»] chr2 (2 HSPs)
chr2 (105-154)||(20143701-20143750)
chr2 (105-154)||(20169760-20169809)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 54 - 397
Target Start/End: Complemental strand, 17744047 - 17743704
Alignment:
Q  54 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17744047 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 17743948  T
Q  154 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 253  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  17743947 ttgacgtaagacaagcaagggccaccagcacgagccccgtcggagagcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcag 17743848  T
Q  254 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17743847 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgtt 17743748  T
Q  354 cttttcattgagtttttgattggataataagtgtttgatgatgt 397  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||    
T  17743747 cttttcattgagtttttgattggataacaagtgtttggtgatgt 17743704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 54 - 397
Target Start/End: Complemental strand, 17734807 - 17734464
Alignment:
Q  54 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 153  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17734807 gttgatgaaatcaacagcagcaagagtcgctttgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgattgttcaacccacacacca 17734708  T
Q  154 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 253  Q
    ||||||| ||||| |||||| ||||| |   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17734707 ttgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 17734608  T
Q  254 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17734607 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 17734508  T
Q  354 cttttcattgagtttttgattggataataagtgtttgatgatgt 397  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||    
T  17734507 cttttcattgagtttttgattggataacaagtgtttggtgatgt 17734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 54 - 397
Target Start/End: Complemental strand, 16720823 - 16720480
Alignment:
Q  54 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 153  Q
    |||||||||||||||||||| || ||  |||| |||||||||| |||| |||||||||||||||||||||||||||| ||  | ||||||||||||||||    
T  16720823 gttgacgaaatcaacagcagcaaaagcagctttgaaatcagtattcataagttgtttgaaggaaggttgaagaggaattgtctgttcaacccacacacca 16720724  T
Q  154 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 253  Q
    ||||||||||||||||||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16720723 ttgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 16720624  T
Q  254 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 353  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||    
T  16720623 actggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgtt 16720524  T
Q  354 cttttcattgagtttttgattggataataagtgtttgatgatgt 397  Q
    || ||| |||||||||||||||||||| ||||||||| ||||||    
T  16720523 ctcttctttgagtttttgattggataacaagtgtttggtgatgt 16720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 54 - 397
Target Start/End: Complemental strand, 17697837 - 17697494
Alignment:
Q  54 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 153  Q
    |||||||||||||||||||| || ||  |||| |||||||||| |||| |||||||||||||||||||||||||||| ||  | ||||||||||||||||    
T  17697837 gttgacgaaatcaacagcagcaaaagcagctttgaaatcagtattcataagttgtttgaaggaaggttgaagaggaattgtctgttcaacccacacacca 17697738  T
Q  154 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 253  Q
    ||||||||||||||||||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17697737 ttgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 17697638  T
Q  254 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 353  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||    
T  17697637 actggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgtt 17697538  T
Q  354 cttttcattgagtttttgattggataataagtgtttgatgatgt 397  Q
    || ||| |||||||||||||||||||| ||||||||| ||||||    
T  17697537 ctcttctttgagtttttgattggataacaagtgtttggtgatgt 17697494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 54 - 397
Target Start/End: Complemental strand, 17716756 - 17716413
Alignment:
Q  54 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 153  Q
    |||||||||||||||  ||| |||||| ||||  |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17716756 gttgacgaaatcaacttcagcaagagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacacca 17716657  T
Q  154 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 253  Q
    ||||||||||||||||||||||||||||   |||| || |||||||||||||||||||| ||| ||||| ||||||||||||||| ||||| |||||| |    
T  17716656 ttgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctg 17716557  T
Q  254 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 353  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||    
T  17716556 actggaggaaggagagaagttgtttttgagtgggaccctcggagccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacatt 17716457  T
Q  354 cttttcattgagtttttgattggataataagtgtttgatgatgt 397  Q
    |||||| |||||||||||||||||||| ||||||||| ||||||    
T  17716456 cttttctttgagtttttgattggataacaagtgtttggtgatgt 17716413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 54 - 397
Target Start/End: Complemental strand, 16729696 - 16729353
Alignment:
Q  54 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 153  Q
    ||||| |||||||||  ||| |||||| ||||  |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  16729696 gttgaggaaatcaacttcagcaagagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacacca 16729597  T
Q  154 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 253  Q
    ||||||||||||||||||||||||||||   |||  || |||||||||||||||||||| ||| ||||| |||||||||||||||||||||  |||||||    
T  16729596 ttgacgtaagacaagcaagggccaccagcgggagtgccatcggagagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcag 16729497  T
Q  254 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 353  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  16729496 actggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgtt 16729397  T
Q  354 cttttcattgagtttttgattggataataagtgtttgatgatgt 397  Q
    |||||| ||||||| |||||||||||| ||||||||| ||||||    
T  16729396 cttttctttgagttcttgattggataacaagtgtttggtgatgt 16729353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 54 - 397
Target Start/End: Complemental strand, 17706768 - 17706425
Alignment:
Q  54 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 153  Q
    ||||| |||||||||  ||| |||||| ||||  |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17706768 gttgaggaaatcaacttcagcaagagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacacca 17706669  T
Q  154 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 253  Q
    ||||||||||||||||||||||||||||   |||  || |||||||||||||||||||| ||| ||||| |||||||||||||||||||||  |||||||    
T  17706668 ttgacgtaagacaagcaagggccaccagcgggagtgccatcggagagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcag 17706569  T
Q  254 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 353  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  17706568 actggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgtt 17706469  T
Q  354 cttttcattgagtttttgattggataataagtgtttgatgatgt 397  Q
    |||||| ||||||| |||||||||||| ||||||||| ||||||    
T  17706468 cttttctttgagttcttgattggataacaagtgtttggtgatgt 17706425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 21465819 - 21465876
Alignment:
Q  111 gaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacgtaagacaag 168  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||| ||| ||||    
T  21465819 gaaggaaggttgaagagaaagtgattgttcaacccacataccattgacgaaagccaag 21465876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 9693235 - 9693302
Alignment:
Q  89 aatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattg 156  Q
    ||||||||| ||||  || |||||||||||||||||||| ||| | ||| || |||||||||||||||    
T  9693235 aatcagtagacatggtttctttgaaggaaggttgaagagaaagggttttctctacccacacaccattg 9693302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 37147652 - 37147601
Alignment:
Q  105 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattg 156  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||||||||||||    
T  37147652 ttgtttgaaggaatgttgaagagaaagtgattgttcaatccacacaccattg 37147601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 47398188 - 47398247
Alignment:
Q  105 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacgtaaga 164  Q
    ||||||||||||||||||||||| ||| | || |||||||||||| ||||||||| ||||    
T  47398188 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacgaaaga 47398247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 5155505 - 5155454
Alignment:
Q  108 tttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacg 159  Q
    |||||||||||||||||||| ||| | || ||||||||| ||||||||||||    
T  5155505 tttgaaggaaggttgaagagaaagggtttgttcaacccatacaccattgacg 5155454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 46490272 - 46490225
Alignment:
Q  105 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacc 152  Q
    ||||||||||||||||||||||| ||| | |||||| |||||||||||    
T  46490272 ttgtttgaaggaaggttgaagagaaagggttttttccacccacacacc 46490225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 46543351 - 46543301
Alignment:
Q  108 tttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgac 158  Q
    |||||||||| |||||| || |||||||| ||||||||| |||||||||||    
T  46543351 tttgaaggaatgttgaaaagtaagtgattgttcaacccatacaccattgac 46543301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 46497451 - 46497386
Alignment:
Q  243 ggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat 308  Q
    ||||||||  || |||||||||  ||||||||| | ||||||||| ||||||||||| ||||||||    
T  46497451 ggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgat 46497386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 51942337 - 51942277
Alignment:
Q  99 catgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacg 159  Q
    ||||| ||||||||||||||||||||||| ||| | |||||| | ||| ||||||| ||||    
T  51942337 catgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcgacg 51942277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 20143750 - 20143701
Alignment:
Q  105 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccat 154  Q
    ||||||||||||||||||||||| ||| | || ||||||||| |||||||    
T  20143750 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 20143701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 20169760 - 20169809
Alignment:
Q  105 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccat 154  Q
    ||||||||||||||||||||||| ||| | || ||||||||| |||||||    
T  20169760 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 20169809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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