View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_11 (Length: 400)
Name: NF5808_low_11
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 38587925 - 38587680
Alignment:
| Q |
18 |
gtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgagtttgtatttggtttctttggccgattggaattgtt |
117 |
Q |
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| T |
38587925 |
gtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgaggttgtattttgtttctttggccaattggaattgtt |
38587826 |
T |
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| Q |
118 |
actaagatccattgcatagaaagctaccgctagttggtttggcaattgtcatcaaagttgcaacaaggggacagatttggaagttatgatttatagtagc |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38587825 |
actaagatccattgcatagaaagcta-tgctagttggtttggcaattgtcatcaaaattgcaacaaggggacagatttggaagttatgatttatagtagc |
38587727 |
T |
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| Q |
218 |
aatcacgctagaaaggtatttggtatatgcatttgtttggtcactta |
264 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38587726 |
aatcgcgctagaaaggtatttggtatatgcatttgtttggtcactta |
38587680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 262 - 392
Target Start/End: Complemental strand, 38584905 - 38584775
Alignment:
| Q |
262 |
ttaataatagtacgtagtaatgagtttgggattttgttgatacgacgtggtgtggtgtttgatactattctcggtgcaattatggagttgattatgattt |
361 |
Q |
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| T |
38584905 |
ttaataatagtacgtagtaatgagtttgagattttgttgatacgacgtggtgtggtgtttgatactattctcggtgcaattatggagttgattctgattt |
38584806 |
T |
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| Q |
362 |
gcttggtcacttctaatgttattgtgcttct |
392 |
Q |
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| T |
38584805 |
tcttggtcacttcttatgttattgtgcttct |
38584775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 21812811 - 21813116
Alignment:
| Q |
18 |
gtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgagtttgtatttggtttctttggccgattggaattgtt |
117 |
Q |
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|||||||||||||| |||||||||| |||||| |||||||||||||| || ||||| |||||| ||||||||| | ||||||| |||||||||||| |
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| T |
21812811 |
gtttgaaagtactcaattgaagaaagaattttgtgccttccgtcattaatccattcgtgtttgaggttgtatttgccta-tttggccaattggaattgtt |
21812909 |
T |
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| Q |
118 |
-actaagatccattgcatagaaagctaccgctagttggtttggcaattgtcatcaaagttgcaacaaggggacagatttggaagttatgatttatagtag |
216 |
Q |
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||||||||||||| | |||||| |||| |||||| |||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||| |
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| T |
21812910 |
tactaagatccattacgtagaaatctacatctagttagtttggcatttgtcatcaaaattgcaataaggggacatatttggaagttatgatttataatag |
21813009 |
T |
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| Q |
217 |
caatcacgctagaaaggtatttggtatatgcatttgtttggtcacttaataatagtacgtagtaatgagtttgggattttgttgatacgacgtggtgtgg |
316 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||| |||| |||| |||||| |
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| T |
21813010 |
caatcacgttagaaaggtatttggtatatgcatttgtttggtcacatgagaata----gtagtaatgagtttggaattttg-tgatttgacgctgtgtgg |
21813104 |
T |
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| Q |
317 |
tgtttgatacta |
328 |
Q |
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|||||||||||| |
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| T |
21813105 |
tgtttgatacta |
21813116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 21813321 - 21813388
Alignment:
| Q |
325 |
actattctcggtgcaattatggagttgattatgatttgcttggtcacttctaatgttattgtgcttct |
392 |
Q |
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|||||||||| |||||||||||| ||||||||||||| |||||||||| || |||||| |||| |||| |
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| T |
21813321 |
actattctcgatgcaattatggaattgattatgattttcttggtcactgcttatgttagtgtggttct |
21813388 |
T |
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