View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_15 (Length: 358)
Name: NF5808_low_15
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 42426367 - 42426699
Alignment:
| Q |
19 |
ttaacaagatactaaaacttattgaatatttatctaactttttaaactttttcataatccataaaactttttgaaatggaatccattgttgtact---at |
115 |
Q |
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| T |
42426367 |
ttaacaagatactaaaacttattgaatatttatctaattttttaaactttttcataatccataaaactttttgaaatggaatccactgttgtactactat |
42426466 |
T |
|
| Q |
116 |
taatggttatcaagacacttaaacttattgaacatttaactaattttttattaaactttttctcataataatattcaaaatcacctacatgacctaatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42426467 |
taatggttatcaagacacttaaacttattgaacatttaactaattttttattaaactttttctcataataatattcaaaatcacctacatgacctaatat |
42426566 |
T |
|
| Q |
216 |
acaatcatttaatccggggcaccatgtaacatcccctaccacagacgatacattgagcttgcattggacaaatagttaaggaagaggaaattggaatcaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |
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| T |
42426567 |
acaatcatttaatccggggcaccatgtaacatcccctaccacagacgatacattgagcttgcattgggcaaatagttaaggaagggggaattggaatcaa |
42426666 |
T |
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| Q |
316 |
tgaacaaagaaagcttatttttctattcctatg |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42426667 |
tgaacaaagaaagcttatttttctattcctatg |
42426699 |
T |
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