View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_16 (Length: 327)
Name: NF5808_low_16
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 29005165 - 29005470
Alignment:
| Q |
19 |
gaacatgtaacattttaaattattgcgaaaaaattgcaat----------gattatagttgcaaaaacatttttaaaaatatggatcnnnnnnnnnnnn- |
107 |
Q |
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| T |
29005165 |
gaacatgtaacattttaaattactgcgaaaaaattgcaatcaaatacaatgattatagttgcaaaaacatttttaaaaatatggatcatatatatatata |
29005264 |
T |
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| Q |
108 |
-gcatgcaagaatttttattgagattttaatacttatatacgttgatgtttatgtactactagaaaaacacgatttagtgacgaacttacaacatcattc |
206 |
Q |
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| T |
29005265 |
tgaatgcatgaacttttattgagattttattacttatatacgttgatgtttgtgtactactagaaaaacacgatttagtgacgaacttacaacatcattc |
29005364 |
T |
|
| Q |
207 |
tttgcaatattgagagcacggagggaggaagcgaggcggcgacaccggtcataagtttgtgaccaagtgaaccgggtaccttcatggatgactgaggtac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29005365 |
tttgcaatattgagagcacggagggaggaagcgaggcggcgacaccggtcataagtttgtgaccaagtgaaccgggttccttcatggatgactgaggtac |
29005464 |
T |
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| Q |
307 |
ggtttg |
312 |
Q |
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|||||| |
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| T |
29005465 |
ggtttg |
29005470 |
T |
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