View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5808_low_17 (Length: 316)
Name: NF5808_low_17
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5808_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 130587 - 130281
Alignment:
| Q |
1 |
caagcatcattgctattgcacctgctatatgcaagaaagtcctaattgatgaagtgacttttaagattggttatccaaaatccgcccttgaattaggcga |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130587 |
caagcatcattgtcattgcacctgctatatgcaagaaagtcctaatagatgaagtgacttttaagattggttatccaaaatccgcccttgaattaggcga |
130488 |
T |
|
| Q |
101 |
tagtaagattctacataaagaacgcggacgttttaaacaactagtatcatctcctatcaatggtcacaatgtattagaaatgtacttagagcgtattgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130487 |
tagtaagattctacataaagaacgcggacgttttaaacaactagtatcatctcctatcaatggtcacaatgtattagaaatgtacttagagcgtattgag |
130388 |
T |
|
| Q |
201 |
gatattgtgatcaacaagctagaagaattgtctagcatgaaacaccctgttgagttccttacggagatgaagaaagcttcttttgaattcgtcattcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130387 |
gatattgtgatcaacaagctagaagaattgtctagcatgaaacaccctgttgagttccttacggagatgaagaaagcttcttttgaattcgtcattcaca |
130288 |
T |
|
| Q |
301 |
tattctt |
307 |
Q |
| |
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| ||||| |
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| T |
130287 |
ttttctt |
130281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 150420 - 150114
Alignment:
| Q |
1 |
caagcatcattgctattgcacctgctatatgcaagaaagtcctaattgatgaagtgacttttaagattggttatccaaaatccgcccttgaattaggcga |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| | ||| |||| ||| | |
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| T |
150420 |
caagcatcattgtcattgcacctgctatatgcaagaaagtcttaattgatgaagtgacctttaaaattggttatccaaaagctgccactgaactagcaaa |
150321 |
T |
|
| Q |
101 |
tagtaagattctacataaagaacgcggacgttttaaacaactagtatcatctcctatcaatggtcacaatgtattagaaatgtacttagagcgtattgag |
200 |
Q |
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| T |
150320 |
aagtaagttactaaatagtgaaaatggacgttttaaacgactagtcgcggctcctatcattggtcggaatgtattagaaatgtacttagagcgtattgag |
150221 |
T |
|
| Q |
201 |
gatattgtgatcaacaagctagaagaattgtctagcatgaaacaccctgttgagttccttacggagatgaagaaagcttcttttgaattcgtcattcaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
150220 |
gatattgtgatcaacaagctagaagaattgtctagcatgaaacaccctgttgagttccttatggagatgagaaaagcttcttttgaattcgtcattcaca |
150121 |
T |
|
| Q |
301 |
tattctt |
307 |
Q |
| |
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| ||||| |
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|
| T |
150120 |
ttttctt |
150114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 168 - 307
Target Start/End: Original strand, 10304346 - 10304485
Alignment:
| Q |
168 |
aatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacaccctgttgagttccttacggaga |
267 |
Q |
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|||||||||| || |||||||| |||||||| |||||||||||||||||| |||||||||| || || ||||||||||||||||||||||| ||||| |
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| T |
10304346 |
aatgtattagtaaaatacttagaacgtattgaagatattgtgatcaacaagttagaagaattatccagtatgaaacaccctgttgagttcctcgtggaga |
10304445 |
T |
|
| Q |
268 |
tgaagaaagcttcttttgaattcgtcattcacatattctt |
307 |
Q |
| |
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||| |||||||||||| ||||| |||||||||| ||||| |
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| T |
10304446 |
tgagaaaagcttcttttaaattcatcattcacattttctt |
10304485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 892416 - 892474
Alignment:
| Q |
201 |
gatattgtgatcaacaagctagaagaattgtctagcatgaaacaccctgttgagttcct |
259 |
Q |
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|
||||||||||||||||||||||||||||| || | |||| |||||||| |||||||||| |
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| T |
892416 |
gatattgtgatcaacaagctagaagaattatccatcatggaacaccctcttgagttcct |
892474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 10304179 - 10304258
Alignment:
| Q |
1 |
caagcatcattgctattgcacctgctatatgcaagaaagtcctaattgatgaagtgacttttaagattggttatccaaaa |
80 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| || |||||||| || | |||||| ||||||||||||| |
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| T |
10304179 |
caagcatcattgtcattgcacctgatatatgcaagaaagttctgattgatgatgtaaactttaagcatggttatccaaaa |
10304258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 3959643 - 3959369
Alignment:
| Q |
1 |
caagcatcattgctattgcacctgctatatgcaagaaagtcctaattgatgaagtgacttttaagattggttatccaaaatccgcccttgaattaggcga |
100 |
Q |
| |
|
|||||||||||| |||| ||| ||||| |||||||||||||||| ||||||||| || |||||| |||||||||||||| || | || | ||| | |
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| T |
3959643 |
caagcatcattgtcattgtaccagctatgtgcaagaaagtcctaaatgatgaagtaacctttaagcttggttatccaaaagccatcactgtactagcata |
3959544 |
T |
|
| Q |
101 |
tagtaagattctacataaagaacgcggacgttttaaacaactagtatcatctcctatcaatggtcacaatgtattagaaatgtacttagagcgtattgag |
200 |
Q |
| |
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| || | | ||| |||| |||| ||||||||| |||| |||||| | ||||||| ||| ||||||||| | |||||| |||||||||||||| |
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| T |
3959543 |
caatagggtactaaataatgaacacggacgtttaaaacgactagtcacggctcctattgccggtaacaatgtatcaacaatgtatctagagcgtattgag |
3959444 |
T |
|
| Q |
201 |
gatattgtgatcaacaagctagaagaattgtctagcatgaaacaccctgttgagttccttacggagatgaagaaa |
275 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |
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| T |
3959443 |
gatattgtgatcaacaagcttgaagaattgtctagcatgaaacaccctgttgagtttcttaaagagatgaggaaa |
3959369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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